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Hmgb1-ps5 Pseudogene Detail
Summary
  • Symbol
    Hmgb1-ps5
  • Name
    high mobility group box 1, pseudogene 5
  • Synonyms
    Hmg-E
Location &
Maps
more
  • Sequence Map
    Chr3:95437729-95438285 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 40.74 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    120 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3776505
 pseudogene Chr3:95437723-95438350 (+)
129S1/SvImJ ENSMUSG00200044661
 pseudogene Chr3:92093989-92094545 (+)
A/J ENSMUSG00195049215
 pseudogene Chr3:92420573-92421129 (+)
AKR/J ENSMUSG00220042226
 pseudogene Chr3:90807638-90808194 (+)
BALB/cJ ENSMUSG00180043118
 pseudogene Chr3:92419831-92420388 (+)
C3H/HeJ ENSMUSG00175029825
 pseudogene Chr3:92064252-92064808 (+)
C57BL/6NJ ENSMUSG00215038858
 pseudogene Chr3:92783085-92783641 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005048559
 pseudogene Chr3:92614564-92615120 (+)
CBA/J ENSMUSG00210051750
 pseudogene Chr3:92601720-92602276 (+)
DBA/2J ENSMUSG00185044824
 pseudogene Chr3:93018345-93018901 (+)
FVB/NJ ENSMUSG00205050321
 pseudogene Chr3:91714995-91715551 (+)
JF1/MsJ ENSUMUG00000053830
 pseudogene Chr3:91907864-91908420 (+)
JF1/MsJ ENSUMUG00000031591
 pseudogene ChrX:36087318-36087876 (-)
LP/J ENSMUSG00230045463
 pseudogene Chr3:94957428-94957984 (+)
NOD/ShiLtJ ENSMUSG00190046797
 pseudogene Chr3:93115155-93115708 (+)
NZO/HlLtJ ENSMUSG00225012483
 pseudogene Chr3:97381807-97382363 (+)
PWK/PhJ ENSLUMG00010052654
 pseudogene Chr3:91888194-91888750 (+)
SPRET/EiJ ENSMSPG00010047719
 pseudogene Chr3:92191394-92191951 (+)
WSB/EiJ ENSIUOG00005033614
 pseudogene Chr3:92534530-92535086 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hmgb1-ps5
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000083822 Ensembl Gene Model | MGI Sequence Detail 557 C57BL/6J ±  kb
transcript ENSMUST00000121058 Ensembl | MGI Sequence Detail 557 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1
Other
Accession IDs
less
MGI:3705500
References
more
  • Summaries
    All 12
    Diseases 1
    Phenotypes 4
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory