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Snhg1 Gene Detail
Summary
  • Symbol
    Snhg1
  • Name
    small nucleolar RNA host gene 1
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3763743
    NCBI Gene: 83673
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:8700851-8703690 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 5.44 cM
Strain
Comparison
more
  • SNPs within 2kb
    191 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3763743
 lncRNA gene Chr19:8700319-8703812 (+)
129S1/SvImJ ENSMUSG00200053079
 lncRNA gene Chr19:5426533-5429543 (+)
A/J ENSMUSG00195053871
 lncRNA gene Chr19:5828026-5831038 (+)
AKR/J ENSMUSG00220051749
 lncRNA gene Chr19:5601271-5604281 (+)
BALB/cJ ENSMUSG00180052144
 lncRNA gene Chr19:6192014-6195024 (+)
C3H/HeJ ENSMUSG00175014599
 lncRNA gene Chr19:5465769-5468779 (+)
C57BL/6NJ ENSMUSG00215047597
 lncRNA gene Chr19:5666976-5669986 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013513
 unclassified non-coding RNA gene Chr19:5915731-5918673 (+)
CAST/EiJ ENSTCUG00005044231
 lncRNA gene Chr19:5304256-5307268 (+)
CBA/J ENSMUSG00210050296
 lncRNA gene Chr19:5482253-5485253 (+)
DBA/2J ENSMUSG00185052611
 lncRNA gene Chr19:5836941-5839941 (+)
FVB/NJ ENSMUSG00205052581
 lncRNA gene Chr19:5523982-5526991 (+)
JF1/MsJ ENSUMUG00000056892
 lncRNA gene Chr19:6073762-6076760 (+)
LP/J ENSMUSG00230054348
 lncRNA gene Chr19:6753194-6756204 (+)
NOD/ShiLtJ ENSMUSG00190052906
 lncRNA gene Chr19:5361585-5364595 (+)
NZO/HlLtJ ENSMUSG00225046684
 lncRNA gene Chr19:10461992-10465002 (+)
PWK/PhJ ENSLUMG00010008817
 lncRNA gene Chr19:5510046-5513042 (+)
SPRET/EiJ ENSMSPG00010051105
 lncRNA gene Chr19:5413899-5416965 (+)
WSB/EiJ ENSIUOG00005051416
 lncRNA gene Chr19:5190512-5193522 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    639
  • Tissues
    38
  • cDNA Data
    85
  • Literature Summary
    4
Sequences &
Gene Models
less
  • All Sequences
    65
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 83673 NCBI Gene Model | MGI Sequence Detail 2840 C57BL/6J ±  kb
transcript NR_002896 RefSeq | MGI Sequence Detail 476 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 85
    cDNA 85

    Microarray probesets 7
References
more
  • Summaries
    All 22
    Developmental Gene Expression 4
    Phenotypes 6
  • Earliest
    J:49278 Tycowski KT, et al., A mammalian gene with introns instead of exons generating stable RNA products [see comments]. Nature. 1996 Feb 1;379(6564):464-6
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory