Vmn2r-ps126 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps126
• Name
  vomeronasal 2, receptor, pseudogene 126

• Feature Type
  pseudogene
• IDs
  MGI:3761612
  NCBI Gene: 100125268
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:20300227-20302563 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  248 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761612	pseudogene	Chr17:20300210-20361673 (+)
129S1/SvImJ	ENSMUSG00200039298	pseudogene	Chr17:15766366-15768702 (+)
A/J	ENSMUSG00195037707	pseudogene	Chr17:16654192-16656528 (+)
AKR/J	ENSMUSG00220027622	pseudogene	Chr17:15954595-15956931 (+)
BALB/cJ	ENSMUSG00180018005	pseudogene	Chr17:15950968-15953304 (+)
C3H/HeJ	ENSMUSG00175042870	pseudogene	Chr17:15797910-15800246 (+)
C57BL/6NJ	ENSMUSG00215043673	pseudogene	Chr17:15769163-15771499 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023454	pseudogene	Chr17:16377448-16386070 (+)
CBA/J	ENSMUSG00210044736	pseudogene	Chr17:15605849-15608185 (+)
DBA/2J	ENSMUSG00185040045	pseudogene	Chr17:17788366-17790702 (+)
FVB/NJ	ENSMUSG00205036512	pseudogene	Chr17:16252360-16254696 (+)
JF1/MsJ	ENSUMUG00000041691	pseudogene	Chr17:16967313-16969647 (+)
LP/J	ENSMUSG00230027291	pseudogene	Chr17:19186428-19188764 (+)
NOD/ShiLtJ	ENSMUSG00190037951	pseudogene	Chr17:15986970-15989306 (+)
NZO/HlLtJ	ENSMUSG00225054786	pseudogene	Chr17:21140131-21142467 (+)
PWK/PhJ	ENSLUMG00010020341	pseudogene	Chr17:15251233-15253567 (+)
SPRET/EiJ	ENSMSPG00010041361	pseudogene	Chr17:16537057-16539397 (+)
WSB/EiJ	ENSIUOG00005041842	pseudogene	Chr17:16551317-16553653 (+)

Homology

• Gene Tree
  Vmn2r-ps126
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Vmn2r-ps126
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000093401 (Evidence)
• NCBI Gene
  100125268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093401	Ensembl Gene Model | MGI Sequence Detail	2337	C57BL/6J
transcript	ENSMUST00000176711	Ensembl | MGI Sequence Detail	1310	Not Applicable

References

• Summaries
  All 21

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964