Vmn2r127 Pseudogene Detail

Summary

• Symbol
  Vmn2r127
• Name
  vomeronasal 2 receptor 127
• Synonyms
  EG665344, Vmn2r-ps119

• Feature Type
  polymorphic pseudogene
  BioType Conflict
  
• IDs
  MGI:3761537
  NCBI Gene: 665344
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:19361730-19397004 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1152 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761537	polymorphic pseudogene	Chr17:19361730-19397018 (+)
129S1/SvImJ	ENSMUSG00200036676	protein coding gene	Chr17:14802202-14837474 (+)
A/J	ENSMUSG00195034145	protein coding gene	Chr17:15689981-15725260 (+)
AKR/J	ENSMUSG00220023323	protein coding gene	Chr17:15024492-15059777 (+)
BALB/cJ	ENSMUSG00180014868	protein coding gene	Chr17:14986742-15022014 (+)
C3H/HeJ	ENSMUSG00175038271	protein coding gene	Chr17:14850770-14886009 (+)
C57BL/6NJ	ENSMUSG00215038559	protein coding gene	Chr17:14827542-14862831 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210029731	protein coding gene	Chr17:14658690-14693929 (+)
DBA/2J	ENSMUSG00185034949	protein coding gene	Chr17:16824186-16859459 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230022557	protein coding gene	Chr17:18222305-18257581 (+)
NOD/ShiLtJ	ENSMUSG00190022788	protein coding gene	Chr17:15045393-15080671 (+)
NZO/HlLtJ	ENSMUSG00225047340	protein coding gene	Chr17:20175985-20211257 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r127
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Vmn2r127
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  4

• Ensembl
  ENSMUSG00000093533 (Evidence)
• NCBI Gene
  665344

Representative Sequences			Length	Strain/Species
genomic	665344	NCBI Gene Model | MGI Sequence Detail	35275	C57BL/6J
transcript	NM_001429911	RefSeq | MGI Sequence Detail	2568	Not Specified
polypeptide	NP_001416840	RefSeq | MGI Sequence Detail	855	Not Specified

Other
Accession IDs

MGI:3647259, MGI:6360901

References

• Summaries
  All 23

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964