Vmn2r-ps111 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps111
• Name
  vomeronasal 2, receptor, pseudogene 111

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3761530
  NCBI Gene: 100125242
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:51666234-51669750 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 26.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  216 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761530	pseudogene	Chr14:51614805-51669750 (+)
129S1/SvImJ	ENSMUSG00200017275	pseudogene	Chr14:40661070-40661459 (+)
A/J	ENSMUSG00195026884	pseudogene	Chr14:40833683-40834072 (+)
AKR/J	ENSMUSG00220042259	pseudogene	Chr14:40254557-40254946 (+)
BALB/cJ	ENSMUSG00180047367	pseudogene	Chr14:40462581-40462970 (+)
C3H/HeJ	ENSMUSG00175051426	pseudogene	Chr14:42200117-42200506 (+)
C57BL/6NJ	ENSMUSG00215039790	pseudogene	Chr14:40693142-40696422 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005039	lincRNA gene	Chr14:43377031-43450931 (+)
CAST/EiJ	ENSTCUG00005050191	pseudogene	Chr14:42487397-42490683 (+)
CBA/J	ENSMUSG00210044309	pseudogene	Chr14:40813691-40814080 (+)
DBA/2J	ENSMUSG00185055316	pseudogene	Chr14:45567903-45571186 (+)
FVB/NJ	ENSMUSG00205049346	pseudogene	Chr14:39943309-39946593 (+)
JF1/MsJ	ENSUMUG00000055350	pseudogene	Chr14:57508689-57511969 (+)
LP/J	ENSMUSG00230053366	pseudogene	Chr14:57787363-57787752 (+)
NOD/ShiLtJ	ENSMUSG00190045204	pseudogene	Chr14:40367119-40370403 (+)
NZO/HlLtJ	ENSMUSG00225051134	pseudogene	Chr14:48085437-48085826 (+)
PWK/PhJ	ENSLUMG00010043184	pseudogene	Chr14:40007638-40008027 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005044258	pseudogene	Chr14:40302141-40305426 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Vmn2r-ps111
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000089761 (Evidence), ENSMUSG00000115374 (Evidence)
• NCBI Gene
  100125242

Representative Sequences			Length	Strain/Species
genomic	100125242	NCBI Gene Model | MGI Sequence Detail	3517	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5