Vmn2r-ps16 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps16
• Name
  vomeronasal 2, receptor, pseudogene 16

• Feature Type
  pseudogene
• IDs
  MGI:3761371
  NCBI Gene: 100125280
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:146689562-146689938 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761371	pseudogene	Chr4:146689562-146689938 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175044254	pseudogene	Chr4:141405241-141405612 (-)
C3H/HeJ	ENSMUSG00175019076	pseudogene	Chr4:150449993-150450369 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210029772	pseudogene	Chr4:138742318-138742699 (-)
DBA/2J	ENSMUSG00185052282	pseudogene	Chr4:143147259-143147635 (+)
DBA/2J	ENSMUSG00185052223	pseudogene	Chr4:141159667-141160043 (+)
DBA/2J	ENSMUSG00185052582	pseudogene	Chr4:141826785-141827161 (-)
DBA/2J	ENSMUSG00185017486	pseudogene	Chr4:143633050-143633421 (-)
DBA/2J	ENSMUSG00185052279	pseudogene	Chr4:142310325-142310701 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000046270	pseudogene	Chr4:141822429-141822805 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190036829	pseudogene	Chr4:139098252-139098632 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010046427	pseudogene	Chr4:138082071-138082447 (-)
PWK/PhJ	ENSLUMG00010028995	pseudogene	Chr4:147926821-147927192 (+)
SPRET/EiJ	ENSMSPG00010036509	pseudogene	Chr4:139507665-139508043 (+)
SPRET/EiJ	ENSMSPG00010036542	pseudogene	Chr4:140569948-140570023 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps16
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  2 involving Vmn2r-ps16
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000095460 (Evidence)
• NCBI Gene
  100125280

Representative Sequences			Length	Strain/Species
genomic	100125280	NCBI Gene Model | MGI Sequence Detail	377	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5
• Latest
  J:299274 Bertozzi TM, et al., KRAB zinc finger protein diversification drives mammalian interindividual methylation variability. Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31290-31300