Vmn2r-ps15 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps15
• Name
  vomeronasal 2, receptor, pseudogene 15

• Feature Type
  pseudogene
• IDs
  MGI:3761370
  NCBI Gene: 100125279
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:145502182-145502558 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  29

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3761370	pseudogene	Chr4:145428245-145502558 (+)
129S1/SvImJ	ENSMUSG00200046412	pseudogene	Chr4:138554407-138554783 (-)
A/J	no annotation
AKR/J	ENSMUSG00220048832	pseudogene	Chr4:139133579-139133955 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210030827	pseudogene	Chr4:138999919-139000295 (+)
CBA/J	ENSMUSG00210030819	pseudogene	Chr4:138842624-138842720 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205045101	pseudogene	Chr4:137973869-137974245 (+)
JF1/MsJ	ENSUMUG00000009802	pseudogene	Chr4:146043811-146044187 (-)
JF1/MsJ	ENSUMUG00000050729	pseudogene	Chr4:141627128-141627503 (+)
JF1/MsJ	ENSUMUG00000049272	pseudogene	Chr4:140635598-140635974 (+)
JF1/MsJ	ENSUMUG00000009146	pseudogene	Chr4:143122106-143122482 (-)
JF1/MsJ	ENSUMUG00000009653	pseudogene	Chr4:145344798-145345174 (+)
JF1/MsJ	ENSUMUG00000009373	pseudogene	Chr4:144180425-144180801 (-)
JF1/MsJ	ENSUMUG00000009254	pseudogene	Chr4:143317928-143318304 (-)
LP/J	ENSMUSG00230019054	pseudogene	Chr4:148987063-148987439 (-)
LP/J	ENSMUSG00230018713	pseudogene	Chr4:145495075-145495451 (-)
LP/J	ENSMUSG00230018544	pseudogene	Chr4:144134830-144135206 (+)
LP/J	ENSMUSG00230018679	pseudogene	Chr4:145298091-145298467 (-)
LP/J	ENSMUSG00230018411	pseudogene	Chr4:150360382-150360753 (-)
LP/J	ENSMUSG00230019146	pseudogene	Chr4:149231210-149231586 (-)
LP/J	ENSMUSG00230017905	pseudogene	Chr4:144343602-144343978 (+)
LP/J	ENSMUSG00230018863	pseudogene	Chr4:147203204-147203580 (-)
LP/J	ENSMUSG00230018831	pseudogene	Chr4:147007532-147007908 (-)
NOD/ShiLtJ	ENSMUSG00190039941	pseudogene	Chr4:138356912-138357291 (-)
NOD/ShiLtJ	ENSMUSG00190033795	pseudogene	Chr4:138706353-138706731 (-)
NOD/ShiLtJ	ENSMUSG00190040677	pseudogene	Chr4:139726832-139727203 (-)
NZO/HlLtJ	ENSMUSG00225011006	pseudogene	Chr4:152203740-152204120 (-)
NZO/HlLtJ	ENSMUSG00225010963	pseudogene	Chr4:150724863-150725243 (+)
NZO/HlLtJ	ENSMUSG00225010321	pseudogene	Chr4:150463220-150463600 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010035065	pseudogene	Chr4:140739087-140739464 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Vmn2r-ps15
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  2 involving Vmn2r-ps15
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000094177 (Evidence)
• NCBI Gene
  100125279

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094177	Ensembl Gene Model | MGI Sequence Detail	377	C57BL/6J
transcript	ENSMUST00000180112	Ensembl | MGI Sequence Detail	377	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5
• Latest
  J:299274 Bertozzi TM, et al., KRAB zinc finger protein diversification drives mammalian interindividual methylation variability. Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31290-31300