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E330020D12Rik Gene Detail
Summary
  • Symbol
    E330020D12Rik
  • Name
    Riken cDNA E330020D12 gene
  • Synonyms
    Gm6648
Location &
Maps
more
  • Sequence Map
    Chr1:153279932-153289979 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 65.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    578 from dbSNP Build 142
  • Strain Annotations
    28
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3761270
 lncRNA gene Chr1:153253594-153290359 (-)
129S1/SvImJ ENSMUSG00200003078
 lncRNA gene Chr1:150721522-150730930 (-)
A/J ENSMUSG00195015070
 lncRNA gene Chr1:150099037-150108446 (-)
AKR/J ENSMUSG00220005904
 lncRNA gene Chr1:149907853-149917255 (-)
BALB/cJ ENSMUSG00180033555
 lncRNA gene Chr1:150328754-150338163 (-)
C3H/HeJ ENSMUSG00175002941
 lncRNA gene Chr1:150365581-150374989 (-)
C57BL/6NJ ENSMUSG00215003814
 lncRNA gene Chr1:150263702-150273113 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005006355
 lncRNA gene Chr1:148921776-148922576 (-)
CAST/EiJ ENSTCUG00005006230
 lncRNA gene Chr1:148901143-148912812 (-)
CAST/EiJ ENSTCUG00005006353
 lncRNA gene Chr1:148916766-148917770 (-)
CBA/J ENSMUSG00210034267
 lncRNA gene Chr1:150269378-150278786 (-)
DBA/2J ENSMUSG00185043237
 protein coding gene Chr1:154525703-154528635 (-)
DBA/2J ENSMUSG00185043255
 protein coding gene Chr1:154547827-154551019 (-)
DBA/2J ENSMUSG00185048082
 lncRNA gene Chr1:154524649-154561686 (-)
FVB/NJ ENSMUSG00205032635
 lncRNA gene Chr1:149381503-149390723 (-)
FVB/NJ ENSMUSG00205028581
 protein coding gene Chr1:149404551-149407890 (-)
FVB/NJ ENSMUSG00205034888
 lncRNA gene Chr1:149404266-149407798 (-)
JF1/MsJ ENSUMUG00000035586
 lncRNA gene Chr1:153711413-153720400 (-)
LP/J ENSMUSG00230013459
 protein coding gene Chr1:154096783-154102783 (-)
LP/J ENSMUSG00230013510
 protein coding gene Chr1:154124177-154127295 (-)
LP/J ENSMUSG00230017512
 lncRNA gene Chr1:154095729-154132874 (-)
NOD/ShiLtJ ENSMUSG00190011495
 protein coding gene Chr1:150082141-150085074 (-)
NOD/ShiLtJ ENSMUSG00190013835
 lncRNA gene Chr1:150081087-150118124 (-)
NOD/ShiLtJ ENSMUSG00190011509
 protein coding gene Chr1:150104265-150107457 (-)
NZO/HlLtJ ENSMUSG00225006201
 lncRNA gene Chr1:157782427-157791835 (-)
PWK/PhJ ENSLUMG00010029689
 lncRNA gene Chr1:149064475-149073695 (-)
SPRET/EiJ ENSMSPG00010005728
 lncRNA gene Chr1:152366197-152384493 (-)
WSB/EiJ ENSIUOG00005025306
 lncRNA gene Chr1:149687503-149696645 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Gene trapped
    2
  • Genomic Mutations
    2 involving E330020D12Rik
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    4 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    624
  • Tissues
    17
  • cDNA Data
    13
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    55
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 626058 NCBI Gene Model | MGI Sequence Detail 10048 C57BL/6J ±  kb
transcript NR_033736 RefSeq | MGI Sequence Detail 2827 C57BL/6  
polypeptide Q3U3Z1 UniProt | EBI | MGI Sequence Detail 106 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 14
    cDNA 13
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:3647713
References
more
  • Summaries
    All 20
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory