Vmn2r-ps60 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps60
• Name
  vomeronasal 2, receptor, pseudogene 60
• Synonyms
  Casr-rs4, Gprc2a-rs4

• Feature Type
  pseudogene
• IDs
  MGI:3757993
  NCBI Gene: 628490
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:42079529-42079793 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3757993	pseudogene	Chr7:42079252-42080148 (-)
129S1/SvImJ	ENSMUSG00200026105	pseudogene	Chr7:29840811-29841707 (-)
A/J	ENSMUSG00195050013	pseudogene	Chr7:33705027-33705923 (-)
AKR/J	ENSMUSG00220053917	pseudogene	Chr7:20462864-20463760 (-)
BALB/cJ	ENSMUSG00180043768	pseudogene	Chr7:31082181-31083077 (-)
C3H/HeJ	ENSMUSG00175043285	pseudogene	Chr7:31323634-31324530 (-)
C57BL/6NJ	ENSMUSG00215045562	pseudogene	Chr7:30357464-30358360 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049006	pseudogene	Chr7:34040369-34041265 (-)
CBA/J	ENSMUSG00210049240	pseudogene	Chr7:31396370-31397266 (-)
DBA/2J	ENSMUSG00185047625	pseudogene	Chr7:35251867-35252763 (-)
FVB/NJ	ENSMUSG00205048229	pseudogene	Chr7:31251686-31252582 (-)
JF1/MsJ	ENSUMUG00000031887	pseudogene	Chr7:39738432-39739328 (-)
LP/J	ENSMUSG00230051630	pseudogene	Chr7:40599477-40600373 (-)
NOD/ShiLtJ	ENSMUSG00190049644	pseudogene	Chr7:31621306-31622202 (-)
NZO/HlLtJ	ENSMUSG00225010460	pseudogene	Chr7:38973782-38974678 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010006176	pseudogene	Chr7:30123551-30124447 (-)
WSB/EiJ	ENSIUOG00005032330	pseudogene	Chr7:31009628-31010524 (-)

Homology

• Gene Tree
  Vmn2r-ps60
  

Expression

• Assay Results
  600
• Tissues
  3
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000070621 (Evidence)
• NCBI Gene
  628490

Representative Sequences			Length	Strain/Species
genomic	628490	NCBI Gene Model | MGI Sequence Detail	265	C57BL/6J
transcript	NR_028441	RefSeq | MGI Sequence Detail	265	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1101769, MGI:1351349

References

• Summaries
  All 11

  Developmental Gene Expression 1
• Earliest
  J:29900 Ho C, et al., A mouse model of human familial hypocalciuric hypercalcemia and neonatal severe hyperparathyroidism [see comments]. Nat Genet. 1995 Dec;11(4):389-94
• Latest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5

TSS for Vmn2r-ps60:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2207	Chr7:42080074-42080076 (-)	-282 bp