Vmn2r-ps58 Pseudogene Detail

Summary

• Symbol
  Vmn2r-ps58
• Name
  vomeronasal 2, receptor, pseudogene 58

• Feature Type
  pseudogene
• IDs
  MGI:3757988
  NCBI Gene: 100124556
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:41952510-41952751 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3757988	pseudogene	Chr7:41952501-41952763 (+)
129S1/SvImJ	ENSMUSG00200026065	pseudogene	Chr7:29714039-29714280 (+)
A/J	ENSMUSG00195049976	pseudogene	Chr7:33578246-33578487 (+)
AKR/J	ENSMUSG00220053907	pseudogene	Chr7:20336098-20336339 (+)
BALB/cJ	ENSMUSG00180043708	pseudogene	Chr7:30955402-30955643 (+)
C3H/HeJ	ENSMUSG00175043154	pseudogene	Chr7:31196861-31197102 (+)
C57BL/6NJ	ENSMUSG00215045479	pseudogene	Chr7:30230720-30230961 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048973	pseudogene	Chr7:33934620-33934861 (+)
CBA/J	ENSMUSG00210049193	pseudogene	Chr7:31269602-31269843 (+)
DBA/2J	ENSMUSG00185049441	pseudogene	Chr7:35146698-35146939 (+)
FVB/NJ	ENSMUSG00205048171	pseudogene	Chr7:31125155-31125396 (+)
JF1/MsJ	ENSUMUG00000032972	pseudogene	Chr7:39633210-39633451 (+)
LP/J	ENSMUSG00230051613	pseudogene	Chr7:40472763-40473004 (+)
NOD/ShiLtJ	ENSMUSG00190049594	pseudogene	Chr7:31494558-31494799 (+)
NZO/HlLtJ	ENSMUSG00225010345	pseudogene	Chr7:38847082-38847323 (+)
PWK/PhJ	ENSLUMG00010050450	pseudogene	Chr7:30033037-30033278 (+)
SPRET/EiJ	ENSMSPG00010006170	pseudogene	Chr7:30010507-30010745 (-)
SPRET/EiJ	ENSMSPG00010006174	pseudogene	Chr7:29964048-29964286 (+)
WSB/EiJ	ENSIUOG00005032288	pseudogene	Chr7:30895403-30895644 (+)

Homology

• Gene Tree
  Vmn2r-ps58
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092370 (Evidence)
• NCBI Gene
  100124556

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092370	Ensembl Gene Model | MGI Sequence Detail	242	C57BL/6J
transcript	ENSMUST00000173044	Ensembl | MGI Sequence Detail	242	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:125082 Young JM, et al., V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet. 2007 May;23(5):212-5