Apol7d Gene Detail

Summary

• Symbol
  Apol7d
• Name
  apolipoprotein L 7d
• Synonyms
  ENSMUSG00000073652, Gm15456

• Feature Type
  lncRNA gene
• IDs
  MGI:3723449
  NCBI Gene: 100042814
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:71692494-71702002 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 36.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  349 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3723449	lncRNA gene	Chr1:71690128-71788968 (+)
129S1/SvImJ	ENSMUSG00200004841	protein coding gene	Chr1:69350054-69354700 (+)
129S1/SvImJ	ENSMUSG00200005217	lncRNA gene	Chr1:69350048-69360049 (+)
A/J	ENSMUSG00195029537	protein coding gene	Chr1:68764732-68769481 (+)
A/J	ENSMUSG00195031753	lncRNA gene	Chr1:68764726-68774737 (+)
AKR/J	ENSMUSG00220039672	lncRNA gene	Chr1:68916969-68926994 (+)
BALB/cJ	ENSMUSG00180033153	lncRNA gene	Chr1:69032353-69042359 (+)
BALB/cJ	ENSMUSG00180029921	protein coding gene	Chr1:69032359-69037108 (+)
C3H/HeJ	ENSMUSG00175000873	lncRNA gene	Chr1:69160165-69170171 (+)
C3H/HeJ	ENSMUSG00175000782	protein coding gene	Chr1:69160171-69164919 (+)
C57BL/6NJ	ENSMUSG00215016933	protein coding gene	Chr1:69078227-69082976 (+)
C57BL/6NJ	ENSMUSG00215027393	lncRNA gene	Chr1:69078221-69088227 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002351	antisense lncRNA gene	Chr1:65256542-65266106 (+)
CAST/EiJ	ENSTCUG00005021606	lncRNA gene	Chr1:68818259-68828304 (+)
CBA/J	ENSMUSG00210003240	lncRNA gene	Chr1:68860395-68870397 (+)
CBA/J	ENSMUSG00210003143	protein coding gene	Chr1:68860401-68865150 (+)
DBA/2J	ENSMUSG00185005219	lncRNA gene	Chr1:69950965-69960965 (+)
DBA/2J	ENSMUSG00185004849	protein coding gene	Chr1:69950971-69955718 (+)
FVB/NJ	ENSMUSG00205012215	protein coding gene	Chr1:68598738-68603485 (+)
FVB/NJ	ENSMUSG00205015426	lncRNA gene	Chr1:68598732-68608725 (+)
JF1/MsJ	ENSUMUG00000004252	lncRNA gene	Chr1:68834381-68844569 (+)
LP/J	ENSMUSG00230002477	protein coding gene	Chr1:69945247-69949994 (+)
LP/J	ENSMUSG00230003118	lncRNA gene	Chr1:69945241-69955241 (+)
NOD/ShiLtJ	ENSMUSG00190013068	protein coding gene	Chr1:69077328-69082075 (+)
NOD/ShiLtJ	ENSMUSG00190014016	lncRNA gene	Chr1:69077322-69087322 (+)
NZO/HlLtJ	ENSMUSG00225040783	lncRNA gene	Chr1:73160307-73170307 (+)
NZO/HlLtJ	ENSMUSG00225039243	protein coding gene	Chr1:73160313-73165060 (+)
PWK/PhJ	ENSLUMG00010007607	lncRNA gene	Chr1:68446372-68456550 (+)
SPRET/EiJ	ENSMSPG00010019810	lncRNA gene	Chr1:70538035-70548239 (+)
WSB/EiJ	ENSIUOG00005029125	lncRNA gene	Chr1:68697449-68707466 (+)

Homology

• Gene Tree
  Apol7d
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  15
• Chemically induced (other)
  1
• Gene trapped
  11
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving Apol7d
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  79
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073652 (Evidence)
• NCBI Gene
  100042814

Representative Sequences			Length	Strain/Species
genomic	100042814	NCBI Gene Model | MGI Sequence Detail	9509	C57BL/6J
transcript	NR_040308	RefSeq | MGI Sequence Detail	1193	C57BL/6
polypeptide	Q3UXQ5	UniProt | EBI | MGI Sequence Detail	135	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3642904

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Apol7d:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7280	Chr1:71690734-71690763 (+)	-1,745 bp