Cyp2c72-ps Pseudogene Detail

Summary

• Symbol
  Cyp2c72-ps
• Name
  cytochrome P450, family 2, subfamily c, polypeptide 72, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3721925
  NCBI Gene: 100125395
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:39335863-39348525 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 33.98 cM

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3721925	pseudogene	Chr19:39335811-39348847 (+)
129S1/SvImJ	ENSMUSG00200032739	pseudogene	Chr19:36143851-36144347 (+)
A/J	ENSMUSG00195012206	pseudogene	Chr19:36243679-36244175 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180034874	pseudogene	Chr19:36569996-36570492 (+)
C3H/HeJ	ENSMUSG00175043463	pseudogene	Chr19:35983565-35984061 (+)
C57BL/6NJ	ENSMUSG00215031757	pseudogene	Chr19:36014426-36033408 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015957	pseudogene	Chr19:35600725-35611432 (+)
CBA/J	ENSMUSG00210038271	pseudogene	Chr19:36065758-36066254 (+)
DBA/2J	ENSMUSG00185034314	pseudogene	Chr19:36585928-36586424 (+)
FVB/NJ	ENSMUSG00205008176	pseudogene	Chr19:35835416-35835912 (+)
JF1/MsJ	ENSUMUG00000048992	pseudogene	Chr19:36763991-36775058 (+)
LP/J	ENSMUSG00230037018	pseudogene	Chr19:37414073-37414569 (+)
NOD/ShiLtJ	ENSMUSG00190011617	pseudogene	Chr19:35975035-35975531 (+)
NZO/HlLtJ	ENSMUSG00225044742	pseudogene	Chr19:40963871-40964367 (+)
PWK/PhJ	ENSLUMG00010001447	pseudogene	Chr19:36106424-36117484 (+)
SPRET/EiJ	ENSMSPG00010023742	pseudogene	Chr19:35817635-35820510 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Cyp2c72-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Cyp2c72-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118146 (Evidence)
• NCBI Gene
  100125395

Representative Sequences			Length	Strain/Species
genomic	100125395	NCBI Gene Model | MGI Sequence Detail	12663	C57BL/6J

Molecular
Reagents

• All nucleic 1

  Genomic 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:241121 Scheer N, et al., Generation and characterization of novel cytochrome P450 Cyp2c gene cluster knockout and CYP2C9 humanized mouse lines. Mol Pharmacol. 2012 Dec;82(6):1022-9
• Latest
  J:341617 Zhang J, et al., CYP eicosanoid pathway mediates colon cancer-promoting effects of dietary linoleic acid. FASEB J. 2023 Jul;37(7):e23009

TSS for Cyp2c72-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156354	Chr19:39335788-39335792 (+)	-73 bp