Gm14820 Gene Detail

Summary

• Symbol
  Gm14820
• Name
  predicted gene 14820

• Feature Type
  lncRNA gene
• IDs
  MGI:3713695
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:7814420-7941242 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.64 cM

Strain
Comparison

• SNPs within 2kb
  2750 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3713695	lncRNA gene	ChrX:7814420-7941242 (+)
129S1/SvImJ	ENSMUSG00200034420	lncRNA gene	ChrX:2609669-2641586 (+)
A/J	ENSMUSG00195042756	lncRNA gene	ChrX:2632837-2664760 (+)
AKR/J	ENSMUSG00220037004	lncRNA gene	ChrX:2620275-2652203 (+)
BALB/cJ	ENSMUSG00180031420	lncRNA gene	ChrX:2630546-2662471 (+)
C3H/HeJ	ENSMUSG00175036187	lncRNA gene	ChrX:2644488-2676411 (+)
C57BL/6NJ	ENSMUSG00215041484	lncRNA gene	ChrX:3308357-3340285 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004268	antisense lncRNA gene	ChrX:2192510-2221078 (+)
CAST/EiJ	ENSTCUG00005035068	lncRNA gene	ChrX:2580054-2610781 (+)
CBA/J	ENSMUSG00210040877	lncRNA gene	ChrX:2661377-2693304 (+)
DBA/2J	ENSMUSG00185029095	lncRNA gene	ChrX:9278498-9310427 (+)
FVB/NJ	ENSMUSG00205036472	lncRNA gene	ChrX:2655135-2687068 (+)
JF1/MsJ	ENSUMUG00000041713	lncRNA gene	ChrX:23165377-23197833 (+)
LP/J	ENSMUSG00230033492	lncRNA gene	ChrX:13798499-13830425 (+)
NOD/ShiLtJ	ENSMUSG00190040391	lncRNA gene	ChrX:2635125-2667050 (+)
NZO/HlLtJ	ENSMUSG00225046145	lncRNA gene	ChrX:19064228-19096151 (+)
PWK/PhJ	ENSLUMG00010036610	lncRNA gene	ChrX:2626805-2659592 (+)
SPRET/EiJ	ENSMSPG00010025255	lncRNA gene	ChrX:2664448-2696438 (+)
WSB/EiJ	ENSIUOG00005033133	lncRNA gene	ChrX:15860859-15892267 (-)

Homology

• Gene Tree
  Gm14820
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  77
• Gene trapped
  77
• Find Mice (IMSR)
  45 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  56

• Ensembl
  ENSMUSG00000087193 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087193	Ensembl Gene Model | MGI Sequence Detail	126823	C57BL/6J
transcript	ENSMUST00000290444	Ensembl | MGI Sequence Detail	1813	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm14820:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160486	ChrX:7915468-7915480 (+)	101,054 bp
Tssr160487	ChrX:7916981-7917026 (+)	102,584 bp
Tssr160488	ChrX:7917821-7917842 (+)	103,412 bp