Gm14820 Gene Detail

Summary

• Symbol
  Gm14820
• Name
  predicted gene 14820

• Feature Type
  lncRNA gene
• IDs
  MGI:3713695
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:7909182-7941112 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.64 cM

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3713695	lncRNA gene	ChrX:7909182-7941112 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004716	antisense lncRNA gene	ChrX:2682043-2714468 (+)
A/J	MGP_AJ_G0004694	antisense lncRNA gene	ChrX:2663648-2696744 (+)
AKR/J	MGP_AKRJ_G0004677	antisense lncRNA gene	ChrX:2760011-2796965 (+)
BALB/cJ	MGP_BALBcJ_G0004678	antisense lncRNA gene	ChrX:2657325-2691133 (+)
C3H/HeJ	MGP_C3HHeJ_G0004626	antisense lncRNA gene	ChrX:2732683-2765328 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004827	antisense lncRNA gene	ChrX:2768154-2801582 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004268	antisense lncRNA gene	ChrX:2192510-2221078 (+)
CAST/EiJ	MGP_CASTEiJ_G0004583	antisense lncRNA gene	ChrX:2624736-2657806 (+)
CBA/J	MGP_CBAJ_G0004621	antisense lncRNA gene	ChrX:2905434-2955127 (+)
DBA/2J	MGP_DBA2J_G0004636	antisense lncRNA gene	ChrX:2650336-2682916 (+)
FVB/NJ	MGP_FVBNJ_G0004654	antisense lncRNA gene	ChrX:2615488-2647180 (+)
LP/J	MGP_LPJ_G0004718	antisense lncRNA gene	ChrX:2696903-2732534 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004640	antisense lncRNA gene	ChrX:2853203-2909064 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004827	antisense lncRNA gene	ChrX:2665595-2698925 (+)
PWK/PhJ	MGP_PWKPhJ_G0004535	antisense lncRNA gene	ChrX:2585775-2618316 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004472	antisense lncRNA gene	ChrX:2643364-2677254 (+)
WSB/EiJ	MGP_WSBEiJ_G0004626	antisense lncRNA gene	ChrX:2670781-2703729 (+)

Homology

• Gene Tree
  Gm14820
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  77
• Gene trapped
  77
• Find Mice (IMSR)
  45 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000087193 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087193	Ensembl Gene Model | MGI Sequence Detail	31931	C57BL/6J
transcript	ENSMUST00000126286	Ensembl | MGI Sequence Detail	1449	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm14820:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160486	ChrX:7915468-7915480 (+)	6,292 bp
Tssr160487	ChrX:7916981-7917026 (+)	7,822 bp
Tssr160488	ChrX:7917821-7917842 (+)	8,650 bp