Gm14692 Gene Detail

Summary

• Symbol
  Gm14692
• Name
  predicted gene 14692

• Feature Type
  protein coding gene
• IDs
  MGI:3713084
  NCBI Gene: 666842
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:66739304-66749956 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3713084	protein coding gene	ChrX:66738423-66750635 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005011886	protein coding gene	ChrX:49600551-49611181 (+)

Homology

• Human Ortholog
  FAM9A, family with sequence similarity 9 member A

• Vertebrate Orthologs
  5

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  FAM9A, family with sequence similarity 9 member A
  
• Synonyms
  TEX39A
• Links
  HGNC:18403

  NCBI Gene ID: 171482

  UniProt: Q8IZU1

  
  
• Chr Location
  Xp22.31; chrX:8790795-8801383 (-)  GRCh38

---

• Human Ortholog
  FAM9C, family with sequence similarity 9 member C
  
• Synonyms
  TEX39C
• Links
  HGNC:18405

  NCBI Gene ID: 171484

  UniProt: Q8IZT9

  
  
• Chr Location
  Xp22.2; chrX:13035617-13044682 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gm14692 stringent orthology
  2 human;1 mouse;2 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: FAM9A, FAM9C
• Gene Tree
  Gm14692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Spontaneous
  1
• Find Mice (IMSR)
  0 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Knockout does not affect spermatogenesis or male fertility.

Expression

• Assay Results
  597

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  6
• UniProt
  1
• CCDS
  CCDS53083.1

• Ensembl
  ENSMUSG00000079577 (Evidence)
• NCBI Gene
  666842

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079577	Ensembl Gene Model | MGI Sequence Detail	10653	C57BL/6J
transcript	ENSMUST00000114672	Ensembl | MGI Sequence Detail	782	Not Applicable
polypeptide	ENSMUSP00000110320	Ensembl | MGI Sequence Detail	229	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3
  IPR006888 XLR/SYCP3/FAM9 domain

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:3779796

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
• Latest
  J:292550 Morimoto K, et al., Reverse genetics reveals single gene of every candidate on Hybrid sterility, X Chromosome QTL 2 (Hstx2) are dispensable for spermatogenesis. Sci Rep. 2020 Jun 3;10(1):9060