Gm10060 Pseudogene Detail

Summary

• Symbol
  Gm10060
• Name
  predicted gene 10060

• Feature Type
  pseudogene
• IDs
  MGI:3710638
  NCBI Gene: 100041567
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:19834762-19834866 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 10.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3710638	pseudogene	Chr8:19834762-19834872 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185007349	pseudogene	Chr8:19366966-19367075 (+)
DBA/2J	ENSMUSG00185007137	pseudogene	Chr8:16870075-16870185 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000035364	pseudogene	Chr8:17566307-17566417 (+)
JF1/MsJ	ENSUMUG00000031781	pseudogene	Chr8:20420581-20420691 (+)
JF1/MsJ	ENSUMUG00000029199	pseudogene	Chr8:20670988-20671098 (+)
JF1/MsJ	ENSUMUG00000036285	pseudogene	Chr8:19938805-19938908 (+)
JF1/MsJ	ENSUMUG00000036301	pseudogene	Chr8:20121465-20121572 (+)
JF1/MsJ	ENSUMUG00000035477	pseudogene	Chr8:18405654-18405764 (+)
JF1/MsJ	ENSUMUG00000035353	pseudogene	Chr8:17440934-17441044 (+)
JF1/MsJ	ENSUMUG00000032156	pseudogene	Chr8:21823743-21823850 (+)
JF1/MsJ	ENSUMUG00000035269	pseudogene	Chr8:17168175-17168285 (+)
JF1/MsJ	ENSUMUG00000032892	pseudogene	Chr8:16897744-16897854 (+)
JF1/MsJ	ENSUMUG00000031416	pseudogene	Chr8:23317840-23317950 (+)
JF1/MsJ	ENSUMUG00000031028	pseudogene	Chr8:20804017-20804127 (+)
JF1/MsJ	ENSUMUG00000031276	pseudogene	Chr8:22655714-22655824 (+)
JF1/MsJ	ENSUMUG00000031857	pseudogene	Chr8:20938958-20939068 (+)
JF1/MsJ	ENSUMUG00000029238	pseudogene	Chr8:21317629-21317739 (+)
JF1/MsJ	ENSUMUG00000036026	pseudogene	Chr8:18984924-18985034 (-)
LP/J	ENSMUSG00230024126	pseudogene	Chr8:18919896-18920006 (+)
LP/J	ENSMUSG00230024710	pseudogene	Chr8:19968143-19968253 (+)
LP/J	ENSMUSG00230012455	pseudogene	Chr8:24313406-24313516 (-)
LP/J	ENSMUSG00230013066	pseudogene	Chr8:25719245-25719355 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225042431	pseudogene	Chr8:26768525-26768635 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10060
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm10060
• Find Mice (IMSR)
  17 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000110669 (Evidence)
• NCBI Gene
  100041567

Representative Sequences			Length	Strain/Species
genomic	100041567	NCBI Gene Model | MGI Sequence Detail	105	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
• Latest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662

TSS for Gm10060:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164700	Chr8:19834731-19834762 (+)	-15 bp