Gm10080 Pseudogene Detail

Summary

• Symbol
  Gm10080
• Name
  predicted gene 10080

• Feature Type
  pseudogene
• IDs
  MGI:3710529
  NCBI Gene: 100043172
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:44286041-44286478 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 24.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3710529	pseudogene	Chr9:44285895-44286507 (-)
129S1/SvImJ	ENSMUSG00200018498	pseudogene	Chr9:41363136-41363573 (-)
A/J	ENSMUSG00195024460	pseudogene	Chr9:41105325-41105762 (-)
AKR/J	ENSMUSG00220041645	pseudogene	Chr9:41202723-41203160 (-)
BALB/cJ	ENSMUSG00180033376	pseudogene	Chr9:41217046-41217483 (-)
C3H/HeJ	ENSMUSG00175016436	pseudogene	Chr9:41228747-41229184 (-)
C57BL/6NJ	ENSMUSG00215035909	pseudogene	Chr9:41206300-41206737 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015755	pseudogene	Chr9:41191898-41192335 (-)
CBA/J	ENSMUSG00210016923	pseudogene	Chr9:41282497-41282934 (-)
DBA/2J	ENSMUSG00185012155	pseudogene	Chr9:41343690-41344127 (-)
FVB/NJ	ENSMUSG00205043339	pseudogene	Chr9:41602196-41602633 (-)
JF1/MsJ	ENSUMUG00000045709	pseudogene	Chr9:41402741-41403178 (-)
LP/J	ENSMUSG00230042761	pseudogene	Chr9:41653608-41654045 (-)
NOD/ShiLtJ	ENSMUSG00190028085	pseudogene	Chr9:41422632-41423069 (-)
NZO/HlLtJ	ENSMUSG00225044556	pseudogene	Chr9:41606172-41606609 (-)
PWK/PhJ	ENSLUMG00010021567	pseudogene	Chr9:41363198-41363635 (-)
SPRET/EiJ	ENSMSPG00010011794	pseudogene	Chr9:42125341-42125778 (-)
WSB/EiJ	ENSIUOG00005021918	pseudogene	Chr9:40839525-40839962 (-)

Homology

• Gene Tree
  Gm10080
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000060467 (Evidence)
• NCBI Gene
  100043172

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060467	Ensembl Gene Model | MGI Sequence Detail	438	C57BL/6J
transcript	ENSMUST00000075585	Ensembl | MGI Sequence Detail	438	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm10080:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr89148	Chr9:44286511-44286535 (-)	-45 bp