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Rbx1-ps Pseudogene Detail
Summary
  • Symbol
    Rbx1-ps
  • Name
    ring-box 1, pseudogene
  • Synonyms
    Gm9840
Location &
Maps
more
  • Sequence Map
    Chr17:36246516-36246842 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 18.78 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3710517
 pseudogene Chr17:36246354-36246897 (-)
129S1/SvImJ MGP_129S1SvImJ_G0011345
 pseudogene Chr17:36145207-36145533 (-)
A/J MGP_AJ_G0011333
 pseudogene Chr17:35020985-35021311 (-)
AKR/J MGP_AKRJ_G0011297
 pseudogene Chr17:35461401-35461727 (-)
BALB/cJ MGP_BALBcJ_G0011310
 pseudogene Chr17:35168075-35168401 (-)
C3H/HeJ MGP_C3HHeJ_G0011198
 pseudogene Chr17:35917221-35917547 (-)
C57BL/6NJ MGP_C57BL6NJ_G0011601
 pseudogene Chr17:37627184-37627510 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0011016
 pseudogene Chr17:36032811-36033137 (-)
CBA/J MGP_CBAJ_G0011178
 pseudogene Chr17:39200074-39200400 (-)
DBA/2J MGP_DBA2J_G0011231
 pseudogene Chr17:34327075-34327401 (-)
FVB/NJ MGP_FVBNJ_G0011231
 pseudogene Chr17:34122687-34123013 (-)
LP/J MGP_LPJ_G0011312
 pseudogene Chr17:36532743-36533069 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0011226
 pseudogene Chr17:37965556-37965882 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0011578
 pseudogene Chr17:35764879-35765205 (-)
PWK/PhJ MGP_PWKPhJ_G0010888
 pseudogene Chr17:33184886-33185212 (-)
SPRET/EiJ MGP_SPRETEiJ_G0010713
 pseudogene Chr17:33814218-33814544 (-)
WSB/EiJ MGP_WSBEiJ_G0011058
 pseudogene Chr17:35923482-35923779 (-)



Homology
more
  • Human Ortholog
    RBX1, ring-box 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBX1, ring-box 1
  • Synonyms
    BA554C12.1, RNF75, ROC1
  • Links
    NCBI Gene ID: 9978
    neXtProt AC: NX_P62877
    UniProt: P62877

  • Chr Location
    22q13.2; chr22:40951347-40973309 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    38
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000049832 Ensembl Gene Model | MGI Sequence Detail 327 C57BL/6J ±  kb
transcript ENSMUST00000173786 Ensembl | MGI Sequence Detail 327 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 7
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory