Ccl21f Gene Detail

Summary

• Symbol
  Ccl21f
• Name
  C-C motif chemokine ligand 21F
• Synonyms
  ENSMUSG00000073878, Gm13304

• Feature Type
  protein coding gene
• IDs
  MGI:3710514
  NCBI Gene: 100504346
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:42114817-42115917 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 22.26 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3710514	protein coding gene	Chr4:42114787-42115917 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004209	protein coding gene	Chr4:38591637-38592770 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190005118	protein coding gene	Chr4:38706494-38707627 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  CCL21, C-C motif chemokine ligand 21

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CCL21, C-C motif chemokine ligand 21
  
• Synonyms
  6Ckine, CKb9, ECL, SCYA21, SLC, TCA4
• Links
  HGNC:10620

  NCBI Gene ID: 6366

  UniProt: O00585

  
  
• Chr Location
  9p13.3; chr9:34709005-34710167 (-)  GRCh38

---

• MGI Vertebrate Homology
  Ccl21f stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: CCL21
• Gene Tree
  Ccl21f
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Ccl21f
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  2
• CCDS
  CCDS51148.1

• Ensembl
  ENSMUSG00000073878 (Evidence)
• NCBI Gene
  100504346

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073878	Ensembl Gene Model | MGI Sequence Detail	1101	C57BL/6J
transcript	ENSMUST00000098123	Ensembl | MGI Sequence Detail	837	Not Applicable
polypeptide	ENSMUSP00000095727	Ensembl | MGI Sequence Detail	133	Not Applicable

Other
Accession IDs

MGI:7526402

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;