D630044L22Rik Gene Detail

Summary

• Symbol
  D630044L22Rik
• Name
  RIKEN cDNA gene D630044L22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3709661
  NCBI Gene: 240054
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26170446-26182584 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3709661	lncRNA gene	Chr17:26170446-26182586 (+)
129S1/SvImJ	ENSMUSG00200054379	lncRNA gene	Chr17:21615485-21627607 (+)
A/J	ENSMUSG00195054467	lncRNA gene	Chr17:22632635-22644785 (+)
AKR/J	ENSMUSG00220053508	lncRNA gene	Chr17:21679446-21691565 (+)
BALB/cJ	ENSMUSG00180052254	lncRNA gene	Chr17:21913506-21925631 (+)
C3H/HeJ	ENSMUSG00175053803	lncRNA gene	Chr17:21671687-21683826 (+)
C57BL/6NJ	ENSMUSG00215054336	lncRNA gene	Chr17:21680055-21692196 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021267	protein coding gene	Chr17:21788814-21800517 (+)
CAST/EiJ	ENSTCUG00005052119	lncRNA gene	Chr17:22261425-22273541 (+)
CBA/J	ENSMUSG00210051546	lncRNA gene	Chr17:21510524-21522664 (+)
DBA/2J	ENSMUSG00185053511	lncRNA gene	Chr17:23720881-23733029 (+)
FVB/NJ	ENSMUSG00205053415	lncRNA gene	Chr17:21976613-21988751 (+)
JF1/MsJ	ENSUMUG00000058069	lncRNA gene	Chr17:23176183-23188278 (+)
LP/J	ENSMUSG00230055074	lncRNA gene	Chr17:25120017-25132138 (+)
NOD/ShiLtJ	ENSMUSG00190054158	lncRNA gene	Chr17:21609602-21621751 (+)
NZO/HlLtJ	ENSMUSG00225054384	lncRNA gene	Chr17:27039949-27052098 (+)
PWK/PhJ	ENSLUMG00010053524	lncRNA gene	Chr17:21095302-21107407 (+)
SPRET/EiJ	ENSMSPG00010050986	lncRNA gene	Chr17:22413188-22425369 (+)
WSB/EiJ	ENSIUOG00005052154	lncRNA gene	Chr17:22353279-22365456 (+)

Homology

• Gene Tree
  D630044L22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving D630044L22Rik
• Incidental Mutations
  APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000097405 (Evidence)
• NCBI Gene
  240054

Representative Sequences			Length	Strain/Species
genomic	240054	NCBI Gene Model | MGI Sequence Detail	12139	C57BL/6J
transcript	NR_152187	RefSeq | MGI Sequence Detail	2964	C57BL/6
polypeptide	Q8C701	UniProt | EBI | MGI Sequence Detail	164	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for D630044L22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143198	Chr17:26180712-26180741 (+)	10,281 bp