Gm9939 Gene Detail

Summary

• Symbol
  Gm9939
• Name
  predicted gene 9939

• Feature Type
  lncRNA gene
• IDs
  MGI:3708775
  NCBI Gene: 105243167
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:35432896-35436610 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 21.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708775	lncRNA gene	Chr8:35432896-35436610 (+)
129S1/SvImJ	ENSMUSG00200007919	lncRNA gene	Chr8:30503719-30506380 (+)
A/J	ENSMUSG00195006420	lncRNA gene	Chr8:31005399-31008060 (+)
AKR/J	ENSMUSG00220006192	lncRNA gene	Chr8:30768174-30770835 (+)
BALB/cJ	ENSMUSG00180003282	lncRNA gene	Chr8:30548755-30551416 (+)
C3H/HeJ	ENSMUSG00175014985	lncRNA gene	Chr8:30711424-30714085 (+)
C57BL/6NJ	ENSMUSG00215009263	lncRNA gene	Chr8:30501008-30503683 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034064	pseudogene	Chr8:29182095-29183256 (+)
CAST/EiJ	ENSTCUG00005005634	lncRNA gene	Chr8:30684800-30687459 (+)
CBA/J	ENSMUSG00210012767	lncRNA gene	Chr8:30534357-30537018 (+)
DBA/2J	ENSMUSG00185002136	lncRNA gene	Chr8:36460679-36463340 (+)
FVB/NJ	ENSMUSG00205004658	lncRNA gene	Chr8:29766903-29769578 (+)
JF1/MsJ	ENSUMUG00000008421	lncRNA gene	Chr8:38176788-38179463 (+)
LP/J	ENSMUSG00230015378	lncRNA gene	Chr8:40111084-40113745 (+)
NOD/ShiLtJ	ENSMUSG00190016245	lncRNA gene	Chr8:30582535-30585196 (+)
NZO/HlLtJ	ENSMUSG00225015129	lncRNA gene	Chr8:43711209-43713870 (+)
PWK/PhJ	ENSLUMG00010013254	lncRNA gene	Chr8:30399852-30402517 (+)
SPRET/EiJ	ENSMSPG00010004609	lncRNA gene	Chr8:31090869-31093490 (+)
WSB/EiJ	ENSIUOG00005005729	lncRNA gene	Chr8:31335270-31339914 (+)

Homology

• Gene Tree
  Gm9939
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30

• Ensembl
  ENSMUSG00000054247 (Evidence)
• NCBI Gene
  105243167

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054247	Ensembl Gene Model | MGI Sequence Detail	3715	C57BL/6J
transcript	ENSMUST00000210951	Ensembl | MGI Sequence Detail	1169	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9