Gm10575 Gene Detail

Summary

• Symbol
  Gm10575
• Name
  predicted gene 10575

• Feature Type
  lncRNA gene
• IDs
  MGI:3708765
  NCBI Gene: 100126795
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:141041394-141047684 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 86.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708765	lncRNA gene	Chr7:141041394-141047684 (-)
129S1/SvImJ	ENSMUSG00200048490	lncRNA gene	Chr7:127606978-127613268 (-)
A/J	ENSMUSG00195041866	lncRNA gene	Chr7:132089467-132095758 (-)
AKR/J	ENSMUSG00220036053	lncRNA gene	Chr7:125571141-125577431 (-)
BALB/cJ	ENSMUSG00180042915	lncRNA gene	Chr7:128781624-128787915 (-)
C3H/HeJ	ENSMUSG00175045696	lncRNA gene	Chr7:129509884-129516174 (-)
C57BL/6NJ	ENSMUSG00215047764	lncRNA gene	Chr7:128776466-128782757 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013823	unclassified non-coding RNA gene	Chr7:143666691-143673052 (-)
CAST/EiJ	ENSTCUG00005051354	lncRNA gene	Chr7:132081602-132087919 (-)
CBA/J	ENSMUSG00210032553	lncRNA gene	Chr7:129267883-129274173 (-)
DBA/2J	ENSMUSG00185018062	lncRNA gene	Chr7:133546428-133552718 (-)
FVB/NJ	ENSMUSG00205046983	lncRNA gene	Chr7:129188705-129194996 (-)
JF1/MsJ	ENSUMUG00000050843	lncRNA gene	Chr7:138624386-138630690 (-)
LP/J	ENSMUSG00230043027	lncRNA gene	Chr7:139709888-139716178 (-)
NOD/ShiLtJ	ENSMUSG00190035147	lncRNA gene	Chr7:129375333-129381621 (-)
NZO/HlLtJ	ENSMUSG00225052235	lncRNA gene	Chr7:137919075-137925364 (-)
PWK/PhJ	ENSLUMG00010048496	lncRNA gene	Chr7:127755274-127761574 (-)
SPRET/EiJ	ENSMSPG00010043916	lncRNA gene	Chr7:129199152-129205455 (-)
WSB/EiJ	ENSIUOG00005036835	lncRNA gene	Chr7:130108884-130115174 (-)

Homology

• Gene Tree
  Gm10575
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm10575
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000073787 (Evidence)
• NCBI Gene
  100126795

Representative Sequences			Length	Strain/Species
genomic	100126795	NCBI Gene Model | MGI Sequence Detail	6291	C57BL/6J
transcript	NR_152219	RefSeq | MGI Sequence Detail	1673	C57BL/6
polypeptide	Q3TYM8	UniProt | EBI | MGI Sequence Detail	96	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for Gm10575:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75664	Chr7:141048571-141048590 (-)	-897 bp