Gm10602 Gene Detail

Summary

• Symbol
  Gm10602
• Name
  predicted gene 10602

• Feature Type
  lncRNA gene
• IDs
  MGI:3708759
  NCBI Gene: 102639173
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr7:101486279-101488395 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 54.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708759	lncRNA gene	Chr7:101485710-101496693 (+)
129S1/SvImJ	ENSMUSG00200050798	lncRNA gene	Chr7:88327569-88333823 (+)
A/J	ENSMUSG00195054781	lncRNA gene	Chr7:92833217-92839471 (+)
AKR/J	ENSMUSG00220051538	lncRNA gene	Chr7:86249842-86256094 (+)
BALB/cJ	ENSMUSG00180037519	lncRNA gene	Chr7:89506154-89512408 (+)
C3H/HeJ	ENSMUSG00175023943	lncRNA gene	Chr7:90159724-90165984 (+)
C57BL/6NJ	ENSMUSG00215034498	lncRNA gene	Chr7:89332663-89338933 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034059	pseudogene	Chr7:104534669-104535295 (+)
CAST/EiJ	ENSTCUG00005053192	lncRNA gene	Chr7:92741291-92747560 (+)
CBA/J	ENSMUSG00210025562	lncRNA gene	Chr7:90013155-90019415 (+)
DBA/2J	ENSMUSG00185057214	lncRNA gene	Chr7:94334896-94341156 (+)
FVB/NJ	ENSMUSG00205041358	lncRNA gene	Chr7:90004326-90010602 (+)
JF1/MsJ	ENSUMUG00000052950	lncRNA gene	Chr7:99235845-99242105 (+)
LP/J	ENSMUSG00230045327	lncRNA gene	Chr7:100441666-100447934 (+)
NOD/ShiLtJ	ENSMUSG00190021473	lncRNA gene	Chr7:90276996-90283278 (+)
NZO/HlLtJ	ENSMUSG00225051579	lncRNA gene	Chr7:98674087-98680366 (+)
PWK/PhJ	ENSLUMG00010049981	lncRNA gene	Chr7:88485458-88491714 (+)
SPRET/EiJ	ENSMSPG00010012894	lncRNA gene	Chr7:89728739-89735174 (+)
WSB/EiJ	ENSIUOG00005010885	lncRNA gene	Chr7:90598647-90604910 (+)

Homology

• Gene Tree
  Gm10602
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10602
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073985 (Evidence)
• NCBI Gene
  102639173

Representative Sequences			Length	Strain/Species
genomic	102639173	NCBI Gene Model | MGI Sequence Detail	2117	C57BL/6J
transcript	NR_175861	RefSeq | MGI Sequence Detail	733	ZRU/MplStud
polypeptide	Q3UUQ4	UniProt | EBI | MGI Sequence Detail	204	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55

TSS for Gm10602:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68266	Chr7:101485795-101485847 (+)	-458 bp
Tssr68267	Chr7:101486270-101486301 (+)	7 bp
Tssr68268	Chr7:101487045-101487104 (+)	796 bp