Gm10254 Pseudogene Detail

Summary

• Symbol
  Gm10254
• Name
  predicted gene 10254
• Synonyms
  EG545524

• Feature Type
  pseudogene
• IDs
  MGI:3708673
  NCBI Gene: 545524
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:54717805-54718671 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 25.70 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708673	pseudogene	Chr3:54717412-54718824 (-)
129S1/SvImJ	ENSMUSG00200023307	pseudogene	Chr3:51569761-51570627 (-)
A/J	ENSMUSG00195032451	pseudogene	Chr3:51506327-51507193 (-)
AKR/J	ENSMUSG00220031663	pseudogene	Chr3:51570583-51571449 (-)
BALB/cJ	ENSMUSG00180027390	pseudogene	Chr3:51591419-51592285 (-)
C3H/HeJ	ENSMUSG00175009158	pseudogene	Chr3:51431179-51432045 (-)
C57BL/6NJ	ENSMUSG00215009821	pseudogene	Chr3:51864362-51865228 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011113	pseudogene	Chr3:143582865-143583695 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210004130	pseudogene	Chr3:51552582-51553448 (-)
DBA/2J	ENSMUSG00185028316	pseudogene	Chr3:51765804-51766670 (-)
FVB/NJ	ENSMUSG00205009694	pseudogene	Chr3:50744596-50745462 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230005128	pseudogene	Chr3:53724379-53725245 (-)
NOD/ShiLtJ	ENSMUSG00190032994	pseudogene	Chr3:51918642-51919508 (-)
NZO/HlLtJ	ENSMUSG00225017944	pseudogene	Chr3:56336784-56337650 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10254
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm10254
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000069011 (Evidence)
• NCBI Gene
  545524

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000069011	Ensembl Gene Model | MGI Sequence Detail	867	C57BL/6J
transcript	ENSMUST00000052888	Ensembl | MGI Sequence Detail	867	Not Applicable

Other
Accession IDs

MGI:3645073

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm10254:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33287	Chr3:54718823-54718825 (-)	-153 bp