Gm10557 Pseudogene Detail

Summary

• Symbol
  Gm10557
• Name
  predicted gene 10557

• Feature Type
  pseudogene
• IDs
  MGI:3708638
  NCBI Gene: 383374
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:4198320-4198938 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 2.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708638	pseudogene	Chr18:4198320-4199135 (-)
129S1/SvImJ	ENSMUSG00200025465	pseudogene	Chr18:1113636-1114254 (-)
A/J	ENSMUSG00195009135	pseudogene	Chr18:1308582-1309200 (-)
AKR/J	ENSMUSG00220019450	pseudogene	Chr18:1295997-1296615 (-)
BALB/cJ	ENSMUSG00180005573	pseudogene	Chr18:1772982-1773600 (-)
C3H/HeJ	ENSMUSG00175007802	pseudogene	Chr18:1308555-1309173 (-)
C57BL/6NJ	ENSMUSG00215019170	pseudogene	Chr18:1029537-1030155 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017640	pseudogene	Chr18:1270661-1271284 (-)
CBA/J	ENSMUSG00210021905	pseudogene	Chr18:1315424-1316042 (-)
DBA/2J	ENSMUSG00185030250	pseudogene	Chr18:1302204-1302822 (-)
DBA/2J	ENSMUSG00185007400	pseudogene	Chr8:17056087-17062216 (+)
DBA/2J	ENSMUSG00185041913	pseudogene	Chr8:20149733-20155865 (+)
DBA/2J	ENSMUSG00185007497	pseudogene	Chr8:17920296-17926437 (+)
FVB/NJ	ENSMUSG00205038060	pseudogene	Chr18:1063950-1064568 (-)
JF1/MsJ	ENSUMUG00000039330	pseudogene	Chr18:1351821-1352700 (-)
LP/J	ENSMUSG00230024704	pseudogene	Chr8:19850211-19856347 (+)
LP/J	ENSMUSG00230028591	pseudogene	Chr18:3363049-3363667 (-)
NOD/ShiLtJ	ENSMUSG00190010085	pseudogene	Chr18:1071154-1071772 (-)
NZO/HlLtJ	ENSMUSG00225043013	pseudogene	Chr8:27203978-27210114 (+)
NZO/HlLtJ	ENSMUSG00225034714	pseudogene	Chr18:3291759-3292377 (-)
NZO/HlLtJ	ENSMUSG00225043086	pseudogene	Chr8:28848354-28854485 (+)
NZO/HlLtJ	ENSMUSG00225042992	pseudogene	Chr8:26940413-26946542 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010011881	pseudogene	Chr18:1038687-1039411 (-)
WSB/EiJ	ENSIUOG00005026952	pseudogene	Chr18:1214319-1214937 (-)

Homology

• Gene Tree
  Gm10557
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000073647 (Evidence)
• NCBI Gene
  383374

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073647	Ensembl Gene Model | MGI Sequence Detail	619	C57BL/6J
transcript	ENSMUST00000097690	Ensembl | MGI Sequence Detail	619	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10557:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152310	Chr18:4198515-4198541 (-)	410 bp