Gm9843 Pseudogene Detail

Summary

• Symbol
  Gm9843
• Name
  predicted gene 9843

• Feature Type
  pseudogene
• IDs
  MGI:3708621
  NCBI Gene: 100039316
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:76200139-76200540 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 43.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708621	pseudogene	Chr16:76200094-76200599 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195023812	pseudogene	Chr16:72842461-72842862 (-)
AKR/J	ENSMUSG00220017935	pseudogene	Chr16:73037491-73037892 (-)
BALB/cJ	ENSMUSG00180002162	pseudogene	Chr16:72937057-72937458 (-)
C3H/HeJ	ENSMUSG00175009421	pseudogene	Chr16:73210436-73210837 (-)
C57BL/6NJ	ENSMUSG00215001763	pseudogene	Chr16:73047599-73048000 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022586	protein coding gene	Chr19:2844177-2845951 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210019792	pseudogene	Chr16:73165292-73165693 (-)
DBA/2J	ENSMUSG00185005366	pseudogene	Chr16:73077313-73077714 (-)
FVB/NJ	ENSMUSG00205014299	pseudogene	Chr16:72953086-72953487 (-)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011685	pseudogene	Chr16:73091589-73091990 (-)
NZO/HlLtJ	ENSMUSG00225029617	pseudogene	Chr16:78874914-78875315 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9843
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  3
• Genomic Mutations
  4 involving Gm9843
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000050299 (Evidence)
• NCBI Gene
  100039316

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050299	Ensembl Gene Model | MGI Sequence Detail	402	C57BL/6J
transcript	ENSMUST00000052867	Ensembl | MGI Sequence Detail	402	Not Applicable

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 8
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:339533 Duchon A, et al., Multi-influential genetic interactions alter behaviour and cognition through six main biological cascades in Down syndrome mouse models. Hum Mol Genet. 2021 May 28;30(9):771-788

TSS for Gm9843:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141824	Chr16:76200561-76200605 (-)	-43 bp