Gm9929 Gene Detail

Summary

• Symbol
  Gm9929
• Name
  predicted gene 9929

• Feature Type
  lncRNA gene
• IDs
  MGI:3708526
  NCBI Gene: 115487180
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:170695399-170698313 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 77.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  185 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708526	lncRNA gene	Chr1:170694982-170768691 (+)
129S1/SvImJ	ENSMUSG00200048313	lncRNA gene	Chr1:168184791-168198332 (+)
A/J	ENSMUSG00195049135	lncRNA gene	Chr1:167496944-167510488 (+)
AKR/J	ENSMUSG00220033947	lncRNA gene	Chr1:167188181-167201879 (+)
BALB/cJ	ENSMUSG00180045481	lncRNA gene	Chr1:167755832-167769522 (+)
C3H/HeJ	ENSMUSG00175048014	lncRNA gene	Chr1:167840346-167853888 (+)
C57BL/6NJ	ENSMUSG00215044709	lncRNA gene	Chr1:167637257-167650960 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013263	unclassified non-coding RNA gene	Chr1:161141340-161142942 (+)
CAST/EiJ	ENSTCUG00005046572	lncRNA gene	Chr1:166153884-166166857 (+)
CBA/J	ENSMUSG00210042044	lncRNA gene	Chr1:167720851-167734546 (+)
DBA/2J	ENSMUSG00185012224	lncRNA gene	Chr1:171937825-171951523 (+)
FVB/NJ	ENSMUSG00205041287	lncRNA gene	Chr1:166698399-166711943 (+)
JF1/MsJ	ENSUMUG00000013951	lncRNA gene	Chr1:171080458-171094164 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190040008	lncRNA gene	Chr1:167496250-167509779 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036144	lncRNA gene	Chr1:166486312-166499855 (+)
SPRET/EiJ	ENSMSPG00010049309	lncRNA gene	Chr1:170035832-170054890 (+)
WSB/EiJ	ENSIUOG00005040106	lncRNA gene	Chr1:166898345-166911435 (+)

Homology

• Gene Tree
  Gm9929
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  21
• Chemically induced (other)
  2
• Gene trapped
  19
• Genomic Mutations
  2 involving Gm9929
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000053925 (Evidence)
• NCBI Gene
  115487180

Representative Sequences			Length	Strain/Species
genomic	115487180	NCBI Gene Model | MGI Sequence Detail	2915	C57BL/6J
transcript	AK089343	GenBank | ENA | DDBJ | MGI Sequence Detail	2869	C57BL/6J
polypeptide	Q8C236	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm9929:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9934	Chr1:170696245-170696276 (+)	862 bp
Tssr9935	Chr1:170696277-170696289 (+)	884 bp