Gm15246 Gene Detail

Summary

• Symbol
  Gm15246
• Name
  predicted gene 15246

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3708120
  NCBI Gene: 101055907
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:168103391-168153137 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 79.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  954 from dbSNP Build 142
• Strain Annotations
  49

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708120	protein coding gene	ChrX:168103391-168153137 (+)
129S1/SvImJ	ENSMUSG00200014111	lncRNA gene	ChrX:144865030-144912585 (+)
129S1/SvImJ	ENSMUSG00200014106	pseudogene	ChrX:144912584-144914398 (+)
129S1/SvImJ	ENSMUSG00200013810	protein coding gene	ChrX:144864569-144914900 (+)
A/J	ENSMUSG00195016074	protein coding gene	ChrX:149964900-150015249 (+)
A/J	ENSMUSG00195016521	lncRNA gene	ChrX:149965361-150012934 (+)
A/J	ENSMUSG00195016505	pseudogene	ChrX:150012933-150014747 (+)
AKR/J	ENSMUSG00220030465	protein coding gene	ChrX:141850990-141901333 (+)
AKR/J	ENSMUSG00220032915	lncRNA gene	ChrX:141851451-141899018 (+)
AKR/J	ENSMUSG00220032899	pseudogene	ChrX:141899017-141900831 (+)
BALB/cJ	ENSMUSG00180017862	protein coding gene	ChrX:145351466-145401814 (+)
BALB/cJ	ENSMUSG00180018169	lncRNA gene	ChrX:145351927-145399499 (+)
BALB/cJ	ENSMUSG00180018154	pseudogene	ChrX:145399498-145401312 (+)
C3H/HeJ	ENSMUSG00175010487	lncRNA gene	ChrX:149898446-149946005 (+)
C3H/HeJ	ENSMUSG00175010483	pseudogene	ChrX:149946004-149947818 (+)
C3H/HeJ	ENSMUSG00175010173	protein coding gene	ChrX:149897985-149948320 (+)
C57BL/6NJ	ENSMUSG00215016164	protein coding gene	ChrX:145724012-145774354 (+)
C57BL/6NJ	ENSMUSG00215018322	pseudogene	ChrX:145772038-145773852 (+)
C57BL/6NJ	ENSMUSG00215018468	lncRNA gene	ChrX:145724473-145772039 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013912	unclassified non-coding RNA gene	ChrX:157367802-157414949 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036931	pseudogene	ChrX:157414948-157416696 (+)
CAST/EiJ	ENSTCUG00005024653	lncRNA gene	ChrX:147440335-147484641 (+)
CAST/EiJ	ENSTCUG00005024644	pseudogene	ChrX:147484640-147486502 (+)
CBA/J	ENSMUSG00210028366	protein coding gene	ChrX:147311604-147361944 (+)
CBA/J	ENSMUSG00210029847	lncRNA gene	ChrX:147312065-147359629 (+)
CBA/J	ENSMUSG00210029835	pseudogene	ChrX:147359628-147361442 (+)
DBA/2J	ENSMUSG00185029875	protein coding gene	ChrX:162165581-162215918 (+)
DBA/2J	ENSMUSG00185030972	lncRNA gene	ChrX:162166042-162213603 (+)
DBA/2J	ENSMUSG00185030958	pseudogene	ChrX:162213602-162215416 (+)
FVB/NJ	ENSMUSG00205002570	protein coding gene	ChrX:145814202-145864549 (+)
FVB/NJ	ENSMUSG00205002831	pseudogene	ChrX:145862233-145864047 (+)
FVB/NJ	ENSMUSG00205002837	lncRNA gene	ChrX:145814663-145862234 (+)
JF1/MsJ	ENSUMUG00000011011	lncRNA gene	ChrX:182592114-182641977 (+)
JF1/MsJ	ENSUMUG00000011097	pseudogene	ChrX:182641976-182643859 (+)
LP/J	ENSMUSG00230027180	lncRNA gene	ChrX:168957814-169005372 (+)
LP/J	ENSMUSG00230026126	protein coding gene	ChrX:168957353-169007687 (+)
LP/J	ENSMUSG00230027025	pseudogene	ChrX:169005371-169007185 (+)
NOD/ShiLtJ	ENSMUSG00190021097	protein coding gene	ChrX:146330202-146380540 (+)
NOD/ShiLtJ	ENSMUSG00190022142	lncRNA gene	ChrX:146330663-146378225 (+)
NOD/ShiLtJ	ENSMUSG00190022133	pseudogene	ChrX:146378224-146380038 (+)
NZO/HlLtJ	ENSMUSG00225038774	pseudogene	ChrX:172428853-172430667 (+)
NZO/HlLtJ	ENSMUSG00225038265	protein coding gene	ChrX:172380881-172431169 (+)
NZO/HlLtJ	ENSMUSG00225038810	lncRNA gene	ChrX:172381342-172428854 (+)
PWK/PhJ	ENSLUMG00010001667	pseudogene	ChrX:143728257-143730071 (+)
PWK/PhJ	ENSLUMG00010001668	lncRNA gene	ChrX:143680689-143728258 (+)
SPRET/EiJ	ENSMSPG00010026444	pseudogene	ChrX:149060886-149062724 (+)
SPRET/EiJ	ENSMSPG00010026466	lncRNA gene	ChrX:149016577-149060887 (+)
WSB/EiJ	ENSIUOG00005011178	lncRNA gene	ChrX:146725018-146772542 (+)
WSB/EiJ	ENSIUOG00005011175	pseudogene	ChrX:146772541-146774355 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3
• Literature Summary
  1

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  82
• RefSeq
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000081137 (Evidence), ENSMUSG00000087159 (Evidence)
• NCBI Gene
  101055907

Representative Sequences			Length	Strain/Species
genomic	101055907	NCBI Gene Model | MGI Sequence Detail	49747	C57BL/6J
transcript	NM_001361166	RefSeq | MGI Sequence Detail	2717	C57BL/6
polypeptide	NP_001348095	RefSeq | MGI Sequence Detail	643	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR028851 Periphilin-1
  IPR057603 Periphilin-1, C-terminal domain

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2670977, MGI:3708119, MGI:4439351

References

• Summaries
  All 18

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:206774 Wolstenholme JT, et al., Sexual differentiation in the developing mouse brain: contributions of sex chromosome genes. Genes Brain Behav. 2013 Mar;12(2):166-80

TSS for Gm15246:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162722	ChrX:168103378-168103416 (+)	6 bp
Tssr162723	ChrX:168103605-168103630 (+)	227 bp
Tssr162724	ChrX:168103642-168103653 (+)	257 bp