Hmgn2l6 Pseudogene Detail

Summary

• Symbol
  Hmgn2l6
• Name
  high-mobility group nucleosomal binding domain 2-like 6

• Feature Type
  pseudogene
• IDs
  MGI:3708112
  NCBI Gene: 633596
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:140653131-140653397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 62.61 cM

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3708112	pseudogene	ChrX:140644095-140653500 (-)
129S1/SvImJ	ENSMUSG00200048274	pseudogene	ChrX:119665402-119665668 (-)
A/J	ENSMUSG00195047983	pseudogene	ChrX:123522713-123522979 (-)
AKR/J	ENSMUSG00220038700	pseudogene	ChrX:116957914-116958180 (-)
BALB/cJ	ENSMUSG00180038980	pseudogene	ChrX:119958096-119958362 (-)
C3H/HeJ	ENSMUSG00175034921	pseudogene	ChrX:123818128-123818394 (-)
C57BL/6NJ	ENSMUSG00215045109	pseudogene	ChrX:120420501-120420767 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012955	pseudogene	ChrX:130372913-130373174 (-)
CAST/EiJ	ENSTCUG00005040458	pseudogene	ChrX:121047607-121047873 (-)
CBA/J	ENSMUSG00210042473	pseudogene	ChrX:120747039-120747305 (-)
DBA/2J	ENSMUSG00185033221	pseudogene	ChrX:134637980-134638246 (-)
FVB/NJ	ENSMUSG00205035100	pseudogene	ChrX:119151746-119152012 (-)
JF1/MsJ	ENSUMUG00000031319	pseudogene	ChrX:153902116-153902382 (-)
LP/J	ENSMUSG00230039912	pseudogene	ChrX:141266128-141266394 (-)
NOD/ShiLtJ	ENSMUSG00190041057	pseudogene	ChrX:120143314-120143580 (-)
NZO/HlLtJ	ENSMUSG00225042815	pseudogene	ChrX:145957748-145958014 (-)
PWK/PhJ	ENSLUMG00010045955	pseudogene	ChrX:118615328-118615594 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005039685	pseudogene	ChrX:120793537-120793803 (-)

Homology

• Gene Tree
  Hmgn2l6
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085466 (Evidence)
• NCBI Gene
  633596

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085466	Ensembl Gene Model | MGI Sequence Detail	267	C57BL/6J
transcript	ENSMUST00000115986	Ensembl | MGI Sequence Detail	267	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Hmgn2l6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164272	ChrX:140653490-140653499 (-)	-98 bp