Gm15445 Gene Detail

Summary

• Symbol
  Gm15445
• Name
  predicted gene 15445

• Feature Type
  lncRNA gene
• IDs
  MGI:3707341
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:135080701-135081544 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 58.24 cM

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3707341	lncRNA gene	Chr1:135080701-135081544 (+)
129S1/SvImJ	ENSMUSG00200008541	lncRNA gene	Chr1:132694269-132695182 (+)
A/J	ENSMUSG00195045279	lncRNA gene	Chr1:131768822-131769717 (+)
AKR/J	ENSMUSG00220050350	lncRNA gene	Chr1:131646774-131647667 (+)
BALB/cJ	ENSMUSG00180038546	lncRNA gene	Chr1:132308552-132309395 (+)
C3H/HeJ	ENSMUSG00175047487	lncRNA gene	Chr1:132012997-132013900 (+)
C57BL/6NJ	ENSMUSG00215045929	lncRNA gene	Chr1:132010323-132011166 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002402	antisense lncRNA gene	Chr1:126756893-126757646 (+)
CAST/EiJ	ENSTCUG00005039273	lncRNA gene	Chr1:130931151-130931992 (+)
CBA/J	ENSMUSG00210028961	lncRNA gene	Chr1:131943453-131944350 (+)
DBA/2J	ENSMUSG00185032514	lncRNA gene	Chr1:136317956-136318849 (+)
FVB/NJ	ENSMUSG00205046284	lncRNA gene	Chr1:131279108-131279999 (+)
JF1/MsJ	ENSUMUG00000051320	lncRNA gene	Chr1:135442230-135443073 (+)
LP/J	ENSMUSG00230040135	lncRNA gene	Chr1:135843308-135844151 (+)
NOD/ShiLtJ	ENSMUSG00190047554	lncRNA gene	Chr1:131957557-131958448 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010027854	lncRNA gene	Chr1:131066469-131067311 (+)
SPRET/EiJ	ENSMSPG00010012525	lncRNA gene	Chr1:133868439-133869288 (+)
WSB/EiJ	ENSIUOG00005048622	lncRNA gene	Chr1:131700869-131701763 (+)

Homology

• Gene Tree
  Gm15445
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm15445
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085311 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085311	Ensembl Gene Model | MGI Sequence Detail	844	C57BL/6J
transcript	ENSMUST00000146700	Ensembl | MGI Sequence Detail	603	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm15445:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8945	Chr1:135080538-135080574 (+)	-145 bp