Rpl10a-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl10a-ps1
• Name
  ribosomal protein L10A, pseudogene 1
• Synonyms
  ENSMUSG00000061631, Gm15451

• Feature Type
  pseudogene
• IDs
  MGI:3705885
  NCBI Gene: 100043141
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:65033110-65033763 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 32.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705885	pseudogene	Chr1:65033078-65033790 (-)
129S1/SvImJ	ENSMUSG00200004850	pseudogene	Chr1:62525592-62526245 (-)
129S1/SvImJ	ENSMUSG00200046020	pseudogene	Chr18:30690343-30690996 (-)
129S1/SvImJ	ENSMUSG00200032279	pseudogene	Chr12:43488562-43489215 (+)
A/J	ENSMUSG00195031449	pseudogene	Chr1:62053504-62054157 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180031372	pseudogene	Chr1:62361402-62362055 (-)
C3H/HeJ	ENSMUSG00175000838	pseudogene	Chr1:62441758-62442411 (-)
C57BL/6NJ	ENSMUSG00215025008	pseudogene	Chr1:62387159-62387812 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205014977	pseudogene	Chr1:62074240-62074893 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230017203	pseudogene	Chr12:53595979-53596632 (+)
LP/J	ENSMUSG00230049554	pseudogene	Chr18:32887267-32887920 (-)
LP/J	ENSMUSG00230002706	pseudogene	Chr1:63234744-63235397 (-)
NOD/ShiLtJ	ENSMUSG00190014158	pseudogene	Chr1:62304771-62305424 (-)
NZO/HlLtJ	ENSMUSG00225047882	pseudogene	Chr18:32795785-32796438 (-)
NZO/HlLtJ	ENSMUSG00225012018	pseudogene	Chr1:187355236-187355886 (-)
NZO/HlLtJ	ENSMUSG00225001315	pseudogene	Chr1:66459477-66460130 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005028994	pseudogene	Chr1:61919149-61919802 (-)

Homology

• Gene Tree
  Rpl10a-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Rpl10a-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084416 (Evidence)
• NCBI Gene
  100043141

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084416	Ensembl Gene Model | MGI Sequence Detail	654	C57BL/6J
transcript	ENSMUST00000120360	Ensembl | MGI Sequence Detail	654	Not Applicable

Other
Accession IDs

MGI:3704188

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Rpl10a-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11949	Chr1:65033792-65033799 (-)	-33 bp