Gm14594 Pseudogene Detail

Summary

• Symbol
  Gm14594
• Name
  predicted gene 14594

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705865
  NCBI Gene: 666096
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:53443706-53458897 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 30.06 cM

Strain
Comparison

• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705865	pseudogene	ChrX:53442064-53458978 (+)
129S1/SvImJ	ENSMUSG00200038272	pseudogene	ChrX:36738054-36753192 (+)
A/J	ENSMUSG00195017276	pseudogene	ChrX:40349672-40365248 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175045025	pseudogene	ChrX:40387199-40523951 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185034570	pseudogene	ChrX:48712316-48818572 (+)
DBA/2J	ENSMUSG00185034584	pseudogene	ChrX:49097521-49112724 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000029896	pseudogene	ChrX:67636241-67651330 (+)
LP/J	ENSMUSG00230030080	pseudogene	ChrX:55544254-55559398 (+)
LP/J	ENSMUSG00230030068	pseudogene	ChrX:55362217-55468394 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225043771	pseudogene	ChrX:60527688-60620638 (+)
NZO/HlLtJ	ENSMUSG00225032554	pseudogene	ChrX:60794186-60809391 (+)
NZO/HlLtJ	ENSMUSG00225032557	pseudogene	ChrX:60882899-60898101 (+)
NZO/HlLtJ	ENSMUSG00225032552	pseudogene	ChrX:60696500-60711643 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010026242	pseudogene	ChrX:39128900-39143885 (+)
WSB/EiJ	no annotation

Homology

• MGI Vertebrate Homology
  Gm14594 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Gm14594
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000081638 (Evidence)
• NCBI Gene
  666096

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081638	Ensembl Gene Model | MGI Sequence Detail	15192	C57BL/6J
transcript	ENSMUST00000118052	Ensembl | MGI Sequence Detail	537	Not Applicable
polypeptide	A6X8J1	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR051443 X-linked Lymphocyte-regulated/Synaptonemal Complex Protein 3

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;