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Defa-ps13 Pseudogene Detail
Summary
  • Symbol
    Defa-ps13
  • Name
    defensin, alpha, pseudogene 13
  • Synonyms
    OTTMUSG00000020671
  • Feature Type
    pseudogene
  • IDs
    MGI:3705864
    NCBI Gene: 654456
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr8:19350693-19354810 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 10.35 cM
Strain
Comparison
more
  • SNPs within 2kb
    89 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3705864
 pseudogene Chr8:19350693-19354810 (+)
129S1/SvImJ MGP_129S1SvImJ_G0040661
 pseudogene Chr8:16775191-16778620 (+)
A/J MGP_AJ_G0040659
 pseudogene Chr8:16241734-16244223 (+)
AKR/J MGP_AKRJ_G0040587
 pseudogene Chr8:16715705-16718411 (+)
BALB/cJ MGP_BALBcJ_G0040650
 pseudogene Chr8:16351510-16353988 (+)
C3H/HeJ MGP_C3HHeJ_G0040288
 pseudogene Chr8:16886979-16889478 (+)
C57BL/6NJ MGP_C57BL6NJ_G0041346
 pseudogene Chr8:17326267-17330423 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0039328
 pseudogene Chr8:16793841-16881909 (+)
CBA/J MGP_CBAJ_G0040254
 pseudogene Chr8:18124651-18131997 (+)
DBA/2J MGP_DBA2J_G0040467
 pseudogene Chr8:16154419-16157105 (+)
FVB/NJ MGP_FVBNJ_G0040391
 pseudogene Chr8:16171270-16174687 (+)
LP/J MGP_LPJ_G0040504
 pseudogene Chr8:16840998-16843446 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0040388
 pseudogene Chr8:18230603-18239626 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0041392
 pseudogene Chr8:16704113-16710148 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0038695
 pseudogene Chr8:16653681-16657277 (+)
WSB/EiJ MGP_WSBEiJ_G0039579
 pseudogene Chr8:16790433-16792887 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 654456 NCBI Gene Model | MGI Sequence Detail 4118 C57BL/6J ±  kb
transcript NR_002881 RefSeq | MGI Sequence Detail 204 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 6
    Phenotypes 1
  • Earliest
    J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory