Setd9-ps Pseudogene Detail

Summary

• Symbol
  Setd9-ps
• Name
  SET domain containing 9, pseudogene
• Synonyms
  Gm15488

• Feature Type
  pseudogene
• IDs
  MGI:3705835
  NCBI Gene: 102633089
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:111858051-111860850 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 63.36 cM

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705835	pseudogene	Chr13:111858013-111860868 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039862	pseudogene	Chr13:114225924-114228779 (-)
A/J	MGP_AJ_G0039868	pseudogene	Chr13:109686902-109689792 (-)
AKR/J	MGP_AKRJ_G0039792	pseudogene	Chr13:112992299-112995135 (-)
BALB/cJ	MGP_BALBcJ_G0039845	pseudogene	Chr13:110382813-110385649 (-)
C3H/HeJ	MGP_C3HHeJ_G0039491	pseudogene	Chr13:112786785-112789621 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040411	pseudogene	Chr13:117655161-117658016 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037007	pseudogene	Chr13:105000709-105003583 (-)
CAST/EiJ	MGP_CASTEiJ_G0038597	pseudogene	Chr13:112393882-112396784 (-)
CBA/J	MGP_CBAJ_G0039460	pseudogene	Chr13:122161421-122164257 (-)
DBA/2J	MGP_DBA2J_G0039663	pseudogene	Chr13:109398868-109401704 (-)
FVB/NJ	MGP_FVBNJ_G0039621	pseudogene	Chr13:108086210-108089046 (-)
LP/J	MGP_LPJ_G0039701	pseudogene	Chr13:114282282-114285137 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039618	pseudogene	Chr13:122499400-122501285 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038270	pseudogene	Chr13:108131336-108144578 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038014	pseudogene	Chr13:108748972-108752080 (-)
WSB/EiJ	MGP_WSBEiJ_G0038828	pseudogene	Chr13:113037676-113040530 (-)

Homology

• Gene Tree
  Setd9-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000084217 (Evidence)
• NCBI Gene
  102633089

Representative Sequences			Length	Strain/Species
genomic	102633089	NCBI Gene Model | MGI Sequence Detail	2800	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;