Gm15375 Pseudogene Detail

Summary

• Symbol
  Gm15375
• Name
  predicted gene 15375

• Feature Type
  pseudogene
• IDs
  MGI:3705815
  NCBI Gene: 677561
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:87952933-87953781 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.48 cM

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705815	pseudogene	Chr1:87952876-87953785 (+)
129S1/SvImJ	ENSMUSG00200039006	pseudogene	Chr1:85177999-85178847 (+)
A/J	ENSMUSG00195033609	pseudogene	Chr1:84738511-84739359 (+)
AKR/J	ENSMUSG00220046953	pseudogene	Chr1:84872711-84873559 (+)
BALB/cJ	ENSMUSG00180018697	pseudogene	Chr1:85042169-85043017 (+)
C3H/HeJ	ENSMUSG00175001696	pseudogene	Chr1:84921083-84921931 (+)
C57BL/6NJ	ENSMUSG00215037790	pseudogene	Chr1:84844084-84844932 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008023	pseudogene	Chr1:84478791-84479639 (+)
CBA/J	ENSMUSG00210012600	pseudogene	Chr1:84766386-84767234 (+)
DBA/2J	ENSMUSG00185017768	pseudogene	Chr1:89222808-89223656 (+)
FVB/NJ	ENSMUSG00205044677	pseudogene	Chr1:84172566-84173414 (+)
JF1/MsJ	ENSUMUG00000023059	pseudogene	Chr1:87983600-87984448 (+)
LP/J	ENSMUSG00230022717	pseudogene	Chr1:88507519-88508367 (+)
NOD/ShiLtJ	ENSMUSG00190034997	pseudogene	Chr1:84813337-84814185 (+)
NZO/HlLtJ	ENSMUSG00225004331	pseudogene	Chr1:92410238-92411086 (+)
PWK/PhJ	ENSLUMG00010047782	pseudogene	Chr1:84363693-84364541 (+)
SPRET/EiJ	ENSMSPG00010047833	pseudogene	Chr1:86401851-86402699 (+)
WSB/EiJ	ENSIUOG00005044490	pseudogene	Chr1:84401316-84402164 (+)

Homology

• Gene Tree
  Gm15375
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15375
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083478 (Evidence)
• NCBI Gene
  677561

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083478	Ensembl Gene Model | MGI Sequence Detail	849	C57BL/6J
transcript	ENSMUST00000119510	Ensembl | MGI Sequence Detail	849	Not Applicable

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm15375:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7921	Chr1:87952863-87952880 (+)	-61 bp