Rpl39-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl39-ps1
• Name
  ribosomal protein L39, pseudogene 1
• Synonyms
  ENSMUSG00000036305, Gm15430, Rpl39-ps

• Feature Type
  pseudogene
• IDs
  MGI:3705781
  NCBI Gene: 100503815
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:102543473-102543623 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 57.75 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705781	pseudogene	Chr15:102543417-102543775 (+)
129S1/SvImJ	ENSMUSG00200052729	pseudogene	Chr15:99768405-99768555 (+)
A/J	ENSMUSG00195047327	pseudogene	Chr15:99657876-99658026 (+)
AKR/J	ENSMUSG00220049740	pseudogene	Chr15:99627799-99627949 (+)
BALB/cJ	ENSMUSG00180048990	pseudogene	Chr15:99541040-99541190 (+)
C3H/HeJ	ENSMUSG00175047892	pseudogene	Chr15:99859711-99859861 (+)
C57BL/6NJ	ENSMUSG00215051766	pseudogene	Chr15:99584469-99584619 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036922	pseudogene	ChrX:30057046-30057401 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210033089	pseudogene	Chr15:99610900-99611050 (+)
DBA/2J	ENSMUSG00185044150	pseudogene	Chr15:99627621-99627771 (+)
FVB/NJ	ENSMUSG00205048363	pseudogene	Chr15:99332388-99332538 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230006882	pseudogene	Chr15:102989411-102989561 (+)
NOD/ShiLtJ	ENSMUSG00190050480	pseudogene	Chr15:99572477-99572627 (+)
NZO/HlLtJ	ENSMUSG00225028196	pseudogene	Chr15:103169049-103169199 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005040302	pseudogene	Chr15:99711857-99712007 (+)

Homology

• Gene Tree
  Rpl39-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Rpl39-ps1
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000036305 (Evidence)
• NCBI Gene
  100503815

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000036305	Ensembl Gene Model | MGI Sequence Detail	151	C57BL/6J
transcript	ENSMUST00000146505	Ensembl | MGI Sequence Detail	151	Not Applicable

Other
Accession IDs

MGI:3704460, MGI:8166769

References

• Summaries
  All 28

  Diseases 1

  Phenotypes 21
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)

TSS for Rpl39-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133461	Chr15:102543413-102543422 (+)	-55 bp