Spin2-ps2 Pseudogene Detail

Summary

• Symbol
  Spin2-ps2
• Name
  spindlin family, member 2, pseudogene 2
• Synonyms
  EG667379, Gm14757

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705652
  NCBI Gene: 667379
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:73720874-73721584 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705652	pseudogene	ChrX:73720816-73722500 (-)
129S1/SvImJ	ENSMUSG00200043303	pseudogene	ChrX:55865643-55866420 (+)
A/J	ENSMUSG00195037801	pseudogene	ChrX:59584795-59585572 (+)
AKR/J	ENSMUSG00220043879	protein coding gene	ChrX:54778635-54780323 (-)
AKR/J	ENSMUSG00220047369	pseudogene	ChrX:54778657-54779434 (-)
BALB/cJ	ENSMUSG00180051323	pseudogene	ChrX:56032057-56032834 (-)
C3H/HeJ	ENSMUSG00175036063	pseudogene	ChrX:59622484-59623261 (-)
C3H/HeJ	ENSMUSG00175033565	protein coding gene	ChrX:59622462-59624150 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043626	pseudogene	ChrX:57554513-57555296 (-)
CBA/J	ENSMUSG00210045811	pseudogene	ChrX:56302274-56303051 (-)
DBA/2J	ENSMUSG00185031609	protein coding gene	ChrX:68850728-68852412 (+)
DBA/2J	ENSMUSG00185035932	pseudogene	ChrX:68724062-68724839 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000017119	pseudogene	ChrX:437428-438211 (+)
JF1/MsJ	ENSUMUG00000019323	pseudogene	ChrX:11973739-11974522 (+)
JF1/MsJ	ENSUMUG00000050679	pseudogene	ChrX:89754685-89755468 (-)
JF1/MsJ	ENSUMUG00000050585	pseudogene	ChrX:89525549-89526332 (+)
JF1/MsJ	ENSUMUG00000050343	pseudogene	ChrX:87989914-87990691 (-)
JF1/MsJ	ENSUMUG00000047355	pseudogene	ChrX:89680570-89681347 (+)
LP/J	ENSMUSG00230034736	protein coding gene	ChrX:75430008-75431667 (+)
LP/J	ENSMUSG00230036914	pseudogene	ChrX:75303335-75304112 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225048963	pseudogene	ChrX:80507396-80508173 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010037968	pseudogene	ChrX:58390083-58390866 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Spin2-ps2
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000080072 (Evidence)
• NCBI Gene
  667379

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080072	Ensembl Gene Model | MGI Sequence Detail	711	C57BL/6J
transcript	ENSMUST00000116186	Ensembl | MGI Sequence Detail	711	Not Applicable
polypeptide	ENSMUSP00000160074	Ensembl | MGI Sequence Detail	236	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR042567 Spindlin/spermiogenesis-specific domain superfamily
  IPR003671 Spindlin/spermiogenesis-specific protein

Other
Accession IDs

MGI:3704139

References

• Summaries
  All 8

  Gene Ontology 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;