Gm15483 Pseudogene Detail

Summary

• Symbol
  Gm15483
• Name
  predicted gene 15483

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705631
  NCBI Gene: 100043695
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:133340208-133340663 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 77.35 cM

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705631	pseudogene	Chr7:133340156-133341916 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014024	pseudogene	Chr7:138498519-138500493 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0014000	pseudogene	Chr7:134368513-134370171 (-)
C3H/HeJ	MGP_C3HHeJ_G0013834	pseudogene	Chr7:138102766-138103711 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014433	pseudogene	Chr7:143753612-143758628 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013492	pseudogene	Chr7:130011518-130011981 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0013893	pseudogene	Chr7:132679545-132681093 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013919	pseudogene	Chr7:149508475-149509510 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014401	pseudogene	Chr7:137272515-137272936 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010146	pseudogene	Chr11:60684304-60684707 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm15483
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  2

• Ensembl
  ENSMUSG00000081431 (Evidence)
• NCBI Gene
  100043695

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081431	Ensembl Gene Model | MGI Sequence Detail	456	C57BL/6J
transcript	ENSMUST00000120338	Ensembl | MGI Sequence Detail	456	Not Applicable
polypeptide	XP_036009550	RefSeq | MGI Sequence Detail	151	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15483:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75270	Chr7:133340676-133340690 (-)	-20 bp