Tma7-ps Pseudogene Detail

Summary

• Symbol
  Tma7-ps
• Name
  translational machinery associated 7 homolog (S. cerevisiae), pseudogene
• Synonyms
  ENSMUSG00000059058

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3705453
  NCBI Gene: 115487184
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:171538656-171538850 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 79.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705453	pseudogene	Chr1:171538638-171539097 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012963	pseudogene	Chr5:5963871-5964065 (+)
A/J	MGP_AJ_G0012950	pseudogene	Chr5:5812651-5812845 (+)
AKR/J	MGP_AKRJ_G0012917	pseudogene	Chr5:5903427-5903620 (+)
BALB/cJ	MGP_BALBcJ_G0012929	pseudogene	Chr5:5992189-5992383 (+)
C3H/HeJ	MGP_C3HHeJ_G0012780	pseudogene	Chr5:6133889-6134083 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010679	pseudogene	Chr1:183430360-183430554 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012751	pseudogene	Chr5:6648715-6648909 (+)
DBA/2J	MGP_DBA2J_G0012825	pseudogene	Chr5:5921779-5921973 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012894	pseudogene	Chr5:6110821-6111015 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012841	pseudogene	Chr5:6638013-6638205 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013287	pseudogene	Chr5:5908393-5908587 (+)
PWK/PhJ	MGP_PWKPhJ_G0012335	pseudogene	Chr5:5705842-5706086 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012552	pseudogene	Chr5:5929700-5929894 (+)

Homology

• Gene Tree
  Tma7-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Tma7-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000059058 (Evidence)
• NCBI Gene
  115487184

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059058	Ensembl Gene Model | MGI Sequence Detail	195	C57BL/6J
transcript	ENSMUST00000118448	Ensembl | MGI Sequence Detail	195	Not Applicable
polypeptide	NP_001359369	RefSeq | MGI Sequence Detail	64	C57BL/6

Other
Accession IDs

MGI:3704202

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:237231 Guo H, et al., Deletion of Slam locus in mice reveals inhibitory role of SLAM family in NK cell responses regulated by cytokines and LFA-1. J Exp Med. 2016 Sep 19;213(10):2187-207
• Latest
  J:328788 Tang Z, et al., Inflammatory macrophages exploit unconventional pro-phagocytic integrins for phagocytosis and anti-tumor immunity. Cell Rep. 2021 Dec 14;37(11):110111