Gm15327 Gene Detail

Summary

• Symbol
  Gm15327
• Name
  predicted gene 15327

• Feature Type
  lncRNA gene
• IDs
  MGI:3705295
  NCBI Gene: 100504675
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:111946169-111947577 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 63.49 cM

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705295	lncRNA gene	Chr13:111945660-111947578 (+)
129S1/SvImJ	ENSMUSG00200032233	lncRNA gene	Chr13:106406332-106408230 (+)
A/J	ENSMUSG00195013676	lncRNA gene	Chr13:106910615-106912507 (+)
AKR/J	ENSMUSG00220031136	lncRNA gene	Chr13:105351581-105353528 (+)
BALB/cJ	ENSMUSG00180030971	lncRNA gene	Chr13:107501602-107503543 (+)
C3H/HeJ	ENSMUSG00175027792	lncRNA gene	Chr13:107579427-107581374 (+)
C57BL/6NJ	ENSMUSG00215028015	lncRNA gene	Chr13:107604050-107605948 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013398	unclassified non-coding RNA gene	Chr13:105080934-105081444 (+)
CAST/EiJ	ENSTCUG00005025708	lncRNA gene	Chr13:106635176-106637065 (+)
CBA/J	ENSMUSG00210011152	lncRNA gene	Chr13:106917036-106918983 (+)
DBA/2J	ENSMUSG00185027091	lncRNA gene	Chr13:110670964-110672917 (+)
FVB/NJ	ENSMUSG00205007682	lncRNA gene	Chr13:106351456-106353403 (+)
JF1/MsJ	ENSUMUG00000013627	lncRNA gene	Chr13:110143087-110144980 (+)
LP/J	ENSMUSG00230013015	lncRNA gene	Chr13:120875350-120877248 (+)
NOD/ShiLtJ	ENSMUSG00190019934	lncRNA gene	Chr13:107199739-107201631 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010340	lncRNA gene	Chr13:106171325-106173225 (+)
SPRET/EiJ	ENSMSPG00010018225	lncRNA gene	Chr13:107841658-107843541 (+)
WSB/EiJ	ENSIUOG00005009561	lncRNA gene	Chr13:106367948-106369847 (+)

Homology

• Gene Tree
  Gm15327
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1

• Ensembl
  ENSMUSG00000085204 (Evidence)
• NCBI Gene
  100504675

Representative Sequences			Length	Strain/Species
genomic	100504675	NCBI Gene Model | MGI Sequence Detail	1409	C57BL/6J
transcript	AK049056	GenBank | ENA | DDBJ | MGI Sequence Detail	1561	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm15327:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121075	Chr13:111944294-111944312 (+)	-1,866 bp
Tssr121076	Chr13:111944318-111944356 (+)	-1,832 bp
Tssr121077	Chr13:111944371-111944394 (+)	-1,786 bp