Gm15138 Gene Detail

Summary

• Symbol
  Gm15138
• Name
  predicted gene 15138

• Feature Type
  lncRNA gene
• IDs
  MGI:3705255
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  ChrX:149952696-149954760 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705255	lncRNA gene	ChrX:149952696-149954760 (+)
129S1/SvImJ	ENSMUSG00200033459	lncRNA gene	ChrX:126747771-126749836 (+)
A/J	ENSMUSG00195021993	lncRNA gene	ChrX:131761178-131763246 (+)
AKR/J	ENSMUSG00220036241	lncRNA gene	ChrX:123757734-123759798 (+)
BALB/cJ	ENSMUSG00180040213	lncRNA gene	ChrX:127144214-127146285 (+)
C3H/HeJ	ENSMUSG00175030923	lncRNA gene	ChrX:131667007-131669074 (+)
C57BL/6NJ	ENSMUSG00215028733	lncRNA gene	ChrX:127432093-127434162 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006891	lincRNA gene	ChrX:139872626-139874738 (+)
CAST/EiJ	ENSTCUG00005038046	lncRNA gene	ChrX:129463932-129466031 (+)
CBA/J	ENSMUSG00210033735	lncRNA gene	ChrX:129144364-129146428 (+)
DBA/2J	ENSMUSG00185046246	lncRNA gene	ChrX:143965830-143967894 (+)
FVB/NJ	ENSMUSG00205027865	lncRNA gene	ChrX:127715492-127717556 (+)
JF1/MsJ	ENSUMUG00000042841	lncRNA gene	ChrX:164174597-164176703 (+)
LP/J	ENSMUSG00230032564	lncRNA gene	ChrX:150767987-150770051 (+)
NOD/ShiLtJ	ENSMUSG00190039947	lncRNA gene	ChrX:128262750-128264814 (+)
NZO/HlLtJ	ENSMUSG00225042297	lncRNA gene	ChrX:154264785-154266851 (+)
PWK/PhJ	ENSLUMG00010034003	lncRNA gene	ChrX:125705920-125708031 (+)
SPRET/EiJ	ENSMSPG00010042495	lncRNA gene	ChrX:130545462-130547550 (+)
WSB/EiJ	ENSIUOG00005041590	lncRNA gene	ChrX:128739719-128741794 (+)

Homology

• Gene Tree
  Gm15138
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000086286 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086286	Ensembl Gene Model | MGI Sequence Detail	2065	C57BL/6J
transcript	ENSMUST00000151778	Ensembl | MGI Sequence Detail	379	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15138:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162333	ChrX:149952472-149952483 (+)	-218 bp
Tssr162334	ChrX:149952495-149952514 (+)	-191 bp
Tssr162335	ChrX:149952560-149952572 (+)	-130 bp
Tssr162336	ChrX:149952616-149952655 (+)	-60 bp
Tssr162337	ChrX:149952669-149952685 (+)	-19 bp