Gm15271 Gene Detail

Summary

• Symbol
  Gm15271
• Name
  predicted gene 15271

• Feature Type
  lncRNA gene
• IDs
  MGI:3705206
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:24279556-24328555 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 11.76 cM

Strain
Comparison

• SNPs within 2kb
  1587 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705206	lncRNA gene	Chr10:24279556-24328555 (+)
129S1/SvImJ	ENSMUSG00200010089	lncRNA gene	Chr10:21167165-21172329 (+)
A/J	ENSMUSG00195014523	lncRNA gene	Chr10:21473007-21478171 (+)
AKR/J	ENSMUSG00220011406	lncRNA gene	Chr10:21153382-21158546 (+)
BALB/cJ	ENSMUSG00180017954	lncRNA gene	Chr10:21596276-21601440 (+)
C3H/HeJ	ENSMUSG00175026908	lncRNA gene	Chr10:21270162-21275326 (+)
C57BL/6NJ	ENSMUSG00215015437	lncRNA gene	Chr10:21111372-21116539 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004630	lincRNA gene	Chr10:20461680-20467974 (+)
CAST/EiJ	ENSTCUG00005014611	lncRNA gene	Chr10:20882340-20887349 (+)
CBA/J	ENSMUSG00210023396	lncRNA gene	Chr10:21227774-21232941 (+)
DBA/2J	ENSMUSG00185007921	lncRNA gene	Chr10:21397709-21402876 (+)
FVB/NJ	ENSMUSG00205010028	lncRNA gene	Chr10:21415322-21420486 (+)
JF1/MsJ	ENSUMUG00000017791	lncRNA gene	Chr10:21183495-21188663 (+)
LP/J	ENSMUSG00230012270	lncRNA gene	Chr10:23201810-23206974 (+)
NOD/ShiLtJ	ENSMUSG00190015513	lncRNA gene	Chr10:21541575-21546742 (+)
NZO/HlLtJ	ENSMUSG00225031376	lncRNA gene	Chr10:27450589-27455756 (+)
PWK/PhJ	ENSLUMG00010010671	lncRNA gene	Chr10:21093941-21099109 (+)
SPRET/EiJ	ENSMSPG00010015790	lncRNA gene	Chr10:21817458-21822756 (+)
WSB/EiJ	ENSIUOG00005031614	lncRNA gene	Chr10:20788977-20794144 (+)

Homology

• Gene Tree
  Gm15271
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15271
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000086148 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086148	Ensembl Gene Model | MGI Sequence Detail	49000	C57BL/6J
transcript	ENSMUST00000134627	Ensembl | MGI Sequence Detail	2110	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15271:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92731	Chr10:24323366-24323370 (+)	43,812 bp