Gm15286 Gene Detail

Summary

• Symbol
  Gm15286
• Name
  predicted gene 15286

• Feature Type
  lncRNA gene
• IDs
  MGI:3705204
  NCBI Gene: 105245631
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:111716795-111781364 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 63.34 cM

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705204	lncRNA gene	Chr13:111716736-111781375 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015262	unclassified non-coding RNA gene	Chr13:114089383-114154216 (+)
A/J	MGP_AJ_G0015236	unclassified non-coding RNA gene	Chr13:109544445-109613649 (+)
AKR/J	MGP_AKRJ_G0015199	unclassified non-coding RNA gene	Chr13:112852152-112920229 (+)
BALB/cJ	MGP_BALBcJ_G0015198	unclassified non-coding RNA gene	Chr13:110247377-110312660 (+)
C3H/HeJ	MGP_C3HHeJ_G0015022	unclassified non-coding RNA gene	Chr13:112639762-112708539 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015655	unclassified non-coding RNA gene	Chr13:117486889-117557697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013397	unclassified non-coding RNA gene	Chr13:104899191-104925497 (+)
CAST/EiJ	MGP_CASTEiJ_G0014575	unclassified non-coding RNA gene	Chr13:112242617-112312559 (+)
CBA/J	MGP_CBAJ_G0015001	unclassified non-coding RNA gene	Chr13:122014064-122089337 (+)
DBA/2J	MGP_DBA2J_G0015094	unclassified non-coding RNA gene	Chr13:109263522-109329180 (+)
FVB/NJ	MGP_FVBNJ_G0015105	unclassified non-coding RNA gene	Chr13:107948431-108013983 (+)
LP/J	MGP_LPJ_G0015175	unclassified non-coding RNA gene	Chr13:114129299-114200967 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015132	unclassified non-coding RNA gene	Chr13:122352634-122422943 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015694	unclassified non-coding RNA gene	Chr13:112298811-112373318 (+)
PWK/PhJ	MGP_PWKPhJ_G0014367	unclassified non-coding RNA gene	Chr13:107991386-108059689 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014154	unclassified non-coding RNA gene	Chr13:108609020-108674677 (+)
WSB/EiJ	MGP_WSBEiJ_G0014678	unclassified non-coding RNA gene	Chr13:112892137-112962842 (+)

Homology

• Gene Tree
  Gm15286
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  16
• Gene trapped
  16
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  3

• Ensembl
  ENSMUSG00000086649 (Evidence)
• NCBI Gene
  105245631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086649	Ensembl Gene Model | MGI Sequence Detail	64570	C57BL/6J
transcript	ENSMUST00000150623	Ensembl | MGI Sequence Detail	743	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15286:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121063	Chr13:111716794-111716825 (+)	15 bp
Tssr121064	Chr13:111717132-111717138 (+)	340 bp