Gm15286 Gene Detail

Summary

• Symbol
  Gm15286
• Name
  predicted gene 15286

• Feature Type
  lncRNA gene
• IDs
  MGI:3705204
  NCBI Gene: 105245631
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:111716795-111781381 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 63.34 cM

Strain
Comparison

• SNPs within 2kb
  2011 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705204	lncRNA gene	Chr13:111716736-111781381 (+)
129S1/SvImJ	ENSMUSG00200032377	lncRNA gene	Chr13:106177403-106241992 (+)
A/J	ENSMUSG00195014056	lncRNA gene	Chr13:106697934-106762564 (+)
AKR/J	ENSMUSG00220031853	lncRNA gene	Chr13:105129582-105194179 (+)
BALB/cJ	ENSMUSG00180031775	lncRNA gene	Chr13:107279587-107344193 (+)
C3H/HeJ	ENSMUSG00175027131	lncRNA gene	Chr13:107357429-107422036 (+)
C57BL/6NJ	ENSMUSG00215027264	lncRNA gene	Chr13:107375135-107439721 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013397	unclassified non-coding RNA gene	Chr13:104899191-104925497 (+)
CAST/EiJ	ENSTCUG00005026585	lncRNA gene	Chr13:106421712-106486165 (+)
CBA/J	ENSMUSG00210010674	lncRNA gene	Chr13:106695034-106759646 (+)
DBA/2J	ENSMUSG00185027429	lncRNA gene	Chr13:110448985-110513588 (+)
FVB/NJ	ENSMUSG00205007092	lncRNA gene	Chr13:106129444-106194064 (+)
JF1/MsJ	ENSUMUG00000013181	lncRNA gene	Chr13:109929856-109995002 (+)
LP/J	ENSMUSG00230008070	lncRNA gene	Chr13:120646457-120711030 (+)
NOD/ShiLtJ	ENSMUSG00190020185	lncRNA gene	Chr13:106986528-107051668 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010010466	lncRNA gene	Chr13:105956615-106022591 (+)
SPRET/EiJ	ENSMSPG00010017420	lncRNA gene	Chr13:107630330-107694550 (+)
WSB/EiJ	ENSIUOG00005009256	lncRNA gene	Chr13:106145819-106210275 (+)

Homology

• Gene Tree
  Gm15286
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  16
• Gene trapped
  16
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  3

• Ensembl
  ENSMUSG00000086649 (Evidence)
• NCBI Gene
  105245631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086649	Ensembl Gene Model | MGI Sequence Detail	64587	C57BL/6J
transcript	ENSMUST00000150623	Ensembl | MGI Sequence Detail	743	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm15286:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121063	Chr13:111716794-111716825 (+)	15 bp
Tssr121064	Chr13:111717132-111717138 (+)	340 bp