Gm15104 Gene Detail

Summary

• Symbol
  Gm15104
• Name
  predicted gene 15104

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3705199
  NCBI Gene: 333588
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:149094920-149120743 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM

Strain
Comparison

• SNPs within 2kb
  532 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705199	protein coding gene	ChrX:149088432-149120743 (-)
129S1/SvImJ	ENSMUSG00200033901	lncRNA gene	ChrX:125891417-125911864 (-)
A/J	ENSMUSG00195021555	lncRNA gene	ChrX:130895139-130915624 (-)
AKR/J	ENSMUSG00220036800	lncRNA gene	ChrX:122899459-122919917 (-)
BALB/cJ	ENSMUSG00180041533	lncRNA gene	ChrX:126287429-126307914 (-)
C3H/HeJ	ENSMUSG00175030387	lncRNA gene	ChrX:130809925-130830384 (-)
C57BL/6NJ	ENSMUSG00215030727	lncRNA gene	ChrX:126574686-126595144 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037632	lncRNA gene	ChrX:128623163-128642757 (-)
CBA/J	ENSMUSG00210034135	lncRNA gene	ChrX:128287295-128307754 (-)
DBA/2J	ENSMUSG00185046745	lncRNA gene	ChrX:143108728-143129186 (-)
FVB/NJ	ENSMUSG00205030615	lncRNA gene	ChrX:126818517-126839007 (-)
JF1/MsJ	ENSUMUG00000044427	lncRNA gene	ChrX:163338775-163358336 (-)
LP/J	ENSMUSG00230032705	lncRNA gene	ChrX:149910941-149931399 (-)
NOD/ShiLtJ	ENSMUSG00190039196	lncRNA gene	ChrX:127404262-127424745 (-)
NZO/HlLtJ	ENSMUSG00225042395	lncRNA gene	ChrX:153408059-153428542 (-)
PWK/PhJ	ENSLUMG00010034496	lncRNA gene	ChrX:124876196-124895767 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005039767	lncRNA gene	ChrX:127875829-127892501 (-)

Homology

• Gene Tree
  Gm15104
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  6

• Ensembl
  ENSMUSG00000087360 (Evidence)
• NCBI Gene
  333588

Representative Sequences			Length	Strain/Species
genomic	333588	NCBI Gene Model | MGI Sequence Detail	25824	C57BL/6J
transcript	NM_001101501	RefSeq | MGI Sequence Detail	1356	C57BL/6
polypeptide	NP_001094971	RefSeq | MGI Sequence Detail	137	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 10
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm15104:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164351	ChrX:149119285-149119288 (-)	1,456 bp