Gm15471 Gene Detail

Summary

• Symbol
  Gm15471
• Name
  predicted gene 15471

• Feature Type
  lncRNA gene
• IDs
  MGI:3705197
  NCBI Gene: 100503157
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:103710445-103715755 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.52 cM

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705197	lncRNA gene	Chr3:103710445-103715756 (+)
129S1/SvImJ	ENSMUSG00200045335	lncRNA gene	Chr3:100318434-100323758 (+)
A/J	ENSMUSG00195050289	lncRNA gene	Chr3:100731974-100737298 (+)
AKR/J	ENSMUSG00220043577	lncRNA gene	Chr3:99091920-99097244 (+)
BALB/cJ	ENSMUSG00180041231	lncRNA gene	Chr3:100660092-100665460 (+)
C3H/HeJ	ENSMUSG00175033844	lncRNA gene	Chr3:100214312-100219636 (+)
C57BL/6NJ	ENSMUSG00215034713	lncRNA gene	Chr3:100980348-100985658 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013643	unclassified non-coding RNA gene	Chr3:97874198-97879658 (+)
CAST/EiJ	ENSTCUG00005020753	lncRNA gene	Chr3:100938850-100944176 (+)
CBA/J	ENSMUSG00210051403	lncRNA gene	Chr3:100836327-100841651 (+)
DBA/2J	ENSMUSG00185022193	lncRNA gene	Chr3:101316514-101321824 (+)
FVB/NJ	ENSMUSG00205034035	lncRNA gene	Chr3:99896987-99902311 (+)
JF1/MsJ	ENSUMUG00000051492	lncRNA gene	Chr3:100057991-100063316 (+)
LP/J	ENSMUSG00230020377	lncRNA gene	Chr3:103246770-103252094 (+)
NOD/ShiLtJ	ENSMUSG00190048016	lncRNA gene	Chr3:101512115-101517483 (+)
NZO/HlLtJ	ENSMUSG00225019938	lncRNA gene	Chr3:105713842-105719210 (+)
PWK/PhJ	ENSLUMG00010030127	lncRNA gene	Chr3:100122261-100127588 (+)
SPRET/EiJ	ENSMSPG00010046443	lncRNA gene	Chr3:100343622-100354184 (+)
WSB/EiJ	ENSIUOG00005031518	lncRNA gene	Chr3:100851596-100856963 (+)

Homology

• Gene Tree
  Gm15471
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15471
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000084997 (Evidence)
• NCBI Gene
  100503157

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084997	Ensembl Gene Model | MGI Sequence Detail	5311	C57BL/6J
transcript	ENSMUST00000149374	Ensembl | MGI Sequence Detail	1235	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm15471:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30997	Chr3:103710437-103710445 (+)	-4 bp
Tssr30998	Chr3:103710949-103710958 (+)	509 bp