Gm15478 Gene Detail

Summary

• Symbol
  Gm15478
• Name
  predicted gene 15478

• Feature Type
  lncRNA gene
• IDs
  MGI:3705145
  NCBI Gene: 100042458
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:67799744-67804119 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 36.17 cM

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705145	lncRNA gene	Chr5:67797205-67804131 (+)
129S1/SvImJ	ENSMUSG00200036529	lncRNA gene	Chr5:63424920-63429280 (+)
A/J	ENSMUSG00195035877	lncRNA gene	Chr5:62779275-62783636 (+)
AKR/J	ENSMUSG00220004389	lncRNA gene	Chr5:62917134-62921495 (+)
BALB/cJ	ENSMUSG00180023370	lncRNA gene	Chr5:62565656-62570030 (+)
C3H/HeJ	ENSMUSG00175028858	lncRNA gene	Chr5:64598041-64602417 (+)
C57BL/6NJ	ENSMUSG00215005905	lncRNA gene	Chr5:63347197-63351572 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003686	antisense lncRNA gene	Chr5:60945116-60950240 (+)
CAST/EiJ	ENSTCUG00005031789	lncRNA gene	Chr5:62509206-62513578 (+)
CBA/J	ENSMUSG00210023438	lncRNA gene	Chr5:63510882-63515259 (+)
DBA/2J	ENSMUSG00185005870	lncRNA gene	Chr5:65368439-65372817 (+)
FVB/NJ	ENSMUSG00205033763	lncRNA gene	Chr5:62317473-62321836 (+)
JF1/MsJ	ENSUMUG00000024075	lncRNA gene	Chr5:69878892-69883248 (+)
LP/J	ENSMUSG00230009494	lncRNA gene	Chr5:70037442-70041802 (+)
NOD/ShiLtJ	ENSMUSG00190004629	lncRNA gene	Chr5:62503878-62508238 (+)
NZO/HlLtJ	ENSMUSG00225010948	lncRNA gene	Chr5:75142158-75146517 (+)
PWK/PhJ	ENSLUMG00010014814	lncRNA gene	Chr5:62489186-62493541 (+)
SPRET/EiJ	ENSMSPG00010036888	lncRNA gene	Chr5:64278385-64282734 (+)
WSB/EiJ	ENSIUOG00005019453	lncRNA gene	Chr5:65474274-65478633 (+)

Homology

• Gene Tree
  Gm15478
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm15478
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000085363 (Evidence)
• NCBI Gene
  100042458

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085363	Ensembl Gene Model | MGI Sequence Detail	4376	C57BL/6J
transcript	ENSMUST00000145914	Ensembl | MGI Sequence Detail	2172	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 25

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm15478:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46595	Chr5:67799511-67799545 (+)	-216 bp