Gm11457 Gene Detail

Summary

• Symbol
  Gm11457
• Name
  predicted gene 11457

• Feature Type
  lncRNA gene
• IDs
  MGI:3705139
  NCBI Gene: 105244354
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:164595020-164611586 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 85.27 cM

Strain
Comparison

• SNPs within 2kb
  373 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705139	lncRNA gene	Chr2:164595020-164611586 (-)
129S1/SvImJ	ENSMUSG00200017391	lncRNA gene	Chr2:161485285-161500678 (-)
A/J	ENSMUSG00195025361	lncRNA gene	Chr2:161817280-161832697 (-)
AKR/J	ENSMUSG00220014463	lncRNA gene	Chr2:161146724-161162149 (-)
BALB/cJ	ENSMUSG00180049899	lncRNA gene	Chr2:161270990-161286409 (-)
C3H/HeJ	ENSMUSG00175051569	lncRNA gene	Chr2:162021603-162037015 (-)
C57BL/6NJ	ENSMUSG00215038673	lncRNA gene	Chr2:161469059-161484486 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003309	antisense lncRNA gene	Chr2:156700275-156714193 (-)
CAST/EiJ	ENSTCUG00005046589	lncRNA gene	Chr2:160388575-160403764 (-)
CBA/J	ENSMUSG00210017349	lncRNA gene	Chr2:161951647-161967064 (-)
DBA/2J	ENSMUSG00185051043	lncRNA gene	Chr2:161688755-161704161 (-)
FVB/NJ	ENSMUSG00205046777	lncRNA gene	Chr2:160709632-160725031 (-)
JF1/MsJ	ENSUMUG00000039050	lncRNA gene	Chr2:161328881-161344264 (-)
LP/J	ENSMUSG00230046116	lncRNA gene	Chr2:163246383-163261776 (-)
NOD/ShiLtJ	ENSMUSG00190046673	lncRNA gene	Chr2:161356501-161371917 (-)
NZO/HlLtJ	ENSMUSG00225053421	lncRNA gene	Chr2:171251082-171266489 (-)
PWK/PhJ	ENSLUMG00010048636	lncRNA gene	Chr2:161231613-161247003 (-)
SPRET/EiJ	ENSMSPG00010032440	lncRNA gene	Chr2:163991613-164006871 (-)
WSB/EiJ	ENSIUOG00005048224	lncRNA gene	Chr2:161077530-161092954 (-)

Homology

• Gene Tree
  Gm11457
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  24
• Gene trapped
  24
• Find Mice (IMSR)
  17 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000086453 (Evidence)
• NCBI Gene
  105244354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086453	Ensembl Gene Model | MGI Sequence Detail	16567	C57BL/6J
transcript	ENSMUST00000124435	Ensembl | MGI Sequence Detail	1661	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm11457:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr27529	Chr2:164611562-164611575 (-)	17 bp