Gm15200 Gene Detail

Summary

• Symbol
  Gm15200
• Name
  predicted gene 15200

• Feature Type
  lncRNA gene
• IDs
  MGI:3705136
  NCBI Gene: 100502608
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:42574029-42575088 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 22.89 cM

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705136	lncRNA gene	Chr10:42574029-42575088 (-)
129S1/SvImJ	ENSMUSG00200010058	lncRNA gene	Chr10:39452553-39453035 (-)
A/J	ENSMUSG00195018436	lncRNA gene	Chr10:39735918-39736400 (-)
AKR/J	ENSMUSG00220028678	lncRNA gene	Chr10:39425126-39425608 (-)
BALB/cJ	ENSMUSG00180017207	lncRNA gene	Chr10:39820053-39820535 (-)
C3H/HeJ	ENSMUSG00175012225	lncRNA gene	Chr10:39615134-39615616 (-)
C57BL/6NJ	ENSMUSG00215011775	lncRNA gene	Chr10:39364504-39364986 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002502	antisense lncRNA gene	Chr10:38118684-38119137 (-)
CAST/EiJ	ENSTCUG00005028656	lncRNA gene	Chr10:39812865-39813329 (-)
CBA/J	ENSMUSG00210026259	lncRNA gene	Chr10:39508671-39509153 (-)
DBA/2J	ENSMUSG00185008585	lncRNA gene	Chr10:39661248-39661730 (-)
FVB/NJ	ENSMUSG00205015594	lncRNA gene	Chr10:39576537-39577019 (-)
JF1/MsJ	ENSUMUG00000038283	lncRNA gene	Chr10:39453309-39453773 (-)
LP/J	ENSMUSG00230006256	lncRNA gene	Chr10:41442335-41442817 (-)
NOD/ShiLtJ	ENSMUSG00190032001	lncRNA gene	Chr10:39789338-39789820 (-)
NZO/HlLtJ	ENSMUSG00225019543	lncRNA gene	Chr10:45754197-45754679 (-)
PWK/PhJ	ENSLUMG00010008404	lncRNA gene	Chr10:39559991-39560455 (-)
SPRET/EiJ	ENSMSPG00010021273	lncRNA gene	Chr10:40595721-40596204 (-)
WSB/EiJ	ENSIUOG00005015778	lncRNA gene	Chr10:39333938-39334420 (-)

Homology

• Gene Tree
  Gm15200
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15200
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000086434 (Evidence)
• NCBI Gene
  100502608

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086434	Ensembl Gene Model | MGI Sequence Detail	1060	C57BL/6J
transcript	ENSMUST00000307165	Ensembl | MGI Sequence Detail	1059	Not Applicable

References

• Summaries
  All 13

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15200:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97451	Chr10:42575075-42575086 (-)	7 bp