Frmd8os Gene Detail

Summary

• Symbol
  Frmd8os
• Name
  FERM domain containing 8, opposite strand
• Synonyms
  Gm9783

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3704490
  NCBI Gene: 69595
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr19:5895978-5901400 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704490	antisense lncRNA gene	Chr19:5895651-5901416 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003467	antisense lncRNA gene	Chr19:2849243-2856841 (+)
A/J	MGP_AJ_G0003446	antisense lncRNA gene	Chr19:2687266-2693960 (+)
AKR/J	MGP_AKRJ_G0003426	antisense lncRNA gene	Chr19:2766915-2772679 (+)
BALB/cJ	MGP_BALBcJ_G0003435	antisense lncRNA gene	Chr19:2680972-2686757 (+)
C3H/HeJ	MGP_C3HHeJ_G0003384	antisense lncRNA gene	Chr19:2779843-2785542 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003573	antisense lncRNA gene	Chr19:2911499-2917211 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003085	antisense lncRNA gene	Chr19:2597060-2602799 (+)
CAST/EiJ	MGP_CASTEiJ_G0003347	antisense lncRNA gene	Chr19:2795828-2801770 (+)
CBA/J	MGP_CBAJ_G0003381	antisense lncRNA gene	Chr19:3048094-3053857 (+)
DBA/2J	MGP_DBA2J_G0003389	antisense lncRNA gene	Chr19:2682179-2687878 (+)
FVB/NJ	MGP_FVBNJ_G0003407	antisense lncRNA gene	Chr19:2683909-2690056 (+)
LP/J	MGP_LPJ_G0003461	antisense lncRNA gene	Chr19:2810794-2816493 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003395	antisense lncRNA gene	Chr19:2879916-2885726 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003576	antisense lncRNA gene	Chr19:2782115-2788367 (+)
PWK/PhJ	MGP_PWKPhJ_G0003303	antisense lncRNA gene	Chr19:2708843-2714634 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003248	antisense lncRNA gene	Chr19:2772110-2777898 (+)
WSB/EiJ	MGP_WSBEiJ_G0003381	antisense lncRNA gene	Chr19:2791667-2797431 (+)

Homology

• Gene Tree
  Frmd8os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  191
• Gene trapped
  191
• Find Mice (IMSR)
  27 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000043488 (Evidence)
• NCBI Gene
  69595

Representative Sequences			Length	Strain/Species
genomic	69595	NCBI Gene Model | MGI Sequence Detail	5423	C57BL/6J
transcript	GU266552	GenBank | ENA | DDBJ | MGI Sequence Detail	516	Not Specified
polypeptide	D2XZ15	UniProt | EBI | MGI Sequence Detail	93	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Frmd8os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154513	Chr19:5895140-5895168 (+)	-824 bp
Tssr154514	Chr19:5895307-5895390 (+)	-629 bp
Tssr154515	Chr19:5896800-5896812 (+)	828 bp
Tssr154516	Chr19:5896876-5896888 (+)	904 bp
Tssr154517	Chr19:5896893-5896914 (+)	926 bp
Tssr154518	Chr19:5896927-5896938 (+)	955 bp
Tssr154519	Chr19:5896992-5897017 (+)	1,027 bp
Tssr154520	Chr19:5898523-5898550 (+)	2,559 bp
Tssr154521	Chr19:5898617-5898696 (+)	2,679 bp