Frmd8os Gene Detail

Summary

• Symbol
  Frmd8os
• Name
  FERM domain containing 8, opposite strand
• Synonyms
  Gm9783

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3704490
  NCBI Gene: 69595
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr19:5895978-5901400 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704490	antisense lncRNA gene	Chr19:5895561-5901416 (+)
129S1/SvImJ	ENSMUSG00200044934	protein coding gene	Chr19:2657968-2664300 (+)
129S1/SvImJ	ENSMUSG00200053301	lncRNA gene	Chr19:2658065-2663830 (+)
A/J	ENSMUSG00195053980	lncRNA gene	Chr19:3053368-3059132 (+)
A/J	ENSMUSG00195048545	protein coding gene	Chr19:3053271-3059602 (+)
AKR/J	ENSMUSG00220050365	lncRNA gene	Chr19:2826500-2832264 (+)
AKR/J	ENSMUSG00220043229	protein coding gene	Chr19:2826403-2832734 (+)
BALB/cJ	ENSMUSG00180040533	protein coding gene	Chr19:3427986-3434317 (+)
BALB/cJ	ENSMUSG00180051318	lncRNA gene	Chr19:3428083-3433847 (+)
C3H/HeJ	ENSMUSG00175015067	lncRNA gene	Chr19:2678275-2684039 (+)
C3H/HeJ	ENSMUSG00175010964	protein coding gene	Chr19:2678178-2684509 (+)
C57BL/6NJ	ENSMUSG00215048516	lncRNA gene	Chr19:2896368-2902134 (+)
C57BL/6NJ	ENSMUSG00215043367	protein coding gene	Chr19:2896271-2902604 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003085	antisense lncRNA gene	Chr19:2597060-2602799 (+)
CAST/EiJ	ENSTCUG00005043190	lncRNA gene	Chr19:2815253-2821200 (+)
CBA/J	ENSMUSG00210033466	protein coding gene	Chr19:2680948-2687278 (+)
CBA/J	ENSMUSG00210050852	lncRNA gene	Chr19:2681045-2686808 (+)
DBA/2J	ENSMUSG00185053372	lncRNA gene	Chr19:3057534-3063297 (+)
DBA/2J	ENSMUSG00185041896	protein coding gene	Chr19:3057437-3063767 (+)
FVB/NJ	ENSMUSG00205052763	lncRNA gene	Chr19:3063675-3069439 (+)
JF1/MsJ	ENSUMUG00000056936	lncRNA gene	Chr19:3033714-3039502 (+)
LP/J	ENSMUSG00230052767	protein coding gene	Chr19:3964860-3971192 (+)
LP/J	ENSMUSG00230054332	lncRNA gene	Chr19:3964957-3970722 (+)
NOD/ShiLtJ	ENSMUSG00190052371	lncRNA gene	Chr19:2587877-2593641 (+)
NOD/ShiLtJ	ENSMUSG00190025802	protein coding gene	Chr19:2587780-2594111 (+)
NZO/HlLtJ	ENSMUSG00225026934	lncRNA gene	Chr19:7673769-7679534 (+)
NZO/HlLtJ	ENSMUSG00225024878	protein coding gene	Chr19:7673672-7680004 (+)
PWK/PhJ	ENSLUMG00010008339	lncRNA gene	Chr19:2799014-2804805 (+)
SPRET/EiJ	ENSMSPG00010050563	lncRNA gene	Chr19:2787098-2792886 (+)
WSB/EiJ	ENSIUOG00005051865	lncRNA gene	Chr19:2701234-2706998 (+)

Homology

• Gene Tree
  Frmd8os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  189
• Gene trapped
  189
• Find Mice (IMSR)
  27 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000043488 (Evidence)
• NCBI Gene
  69595

Representative Sequences			Length	Strain/Species
genomic	69595	NCBI Gene Model | MGI Sequence Detail	5423	C57BL/6J
transcript	GU266552	GenBank | ENA | DDBJ | MGI Sequence Detail	516	Not Specified
polypeptide	D2XZ15	UniProt | EBI | MGI Sequence Detail	93	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Frmd8os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154513	Chr19:5895140-5895168 (+)	-824 bp
Tssr154514	Chr19:5895307-5895390 (+)	-629 bp
Tssr154515	Chr19:5896800-5896812 (+)	828 bp
Tssr154516	Chr19:5896876-5896888 (+)	904 bp
Tssr154517	Chr19:5896893-5896914 (+)	926 bp
Tssr154518	Chr19:5896927-5896938 (+)	955 bp
Tssr154519	Chr19:5896992-5897017 (+)	1,027 bp
Tssr154520	Chr19:5898523-5898550 (+)	2,559 bp
Tssr154521	Chr19:5898617-5898696 (+)	2,679 bp