Gm10545 MGI Mouse Gene Detail - MGI:3704485

Symbol

Gm10545
Name

predicted gene 10545

Feature Type

lncRNA gene
IDs

MGI:3704485
NCBI Gene: 100049566
Alliance

genome feature page

Sequence Map

Chr18:37141921-37153732 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 18, 19.46 cM
Mapping Data

1 experiment

SNPs within 2kb

516 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704485	lncRNA gene	Chr18:37141921-37153732 (-)
129S1/SvImJ	ENSMUSG00200043846	protein coding gene	Chr18:34150475-34161517 (-)
129S1/SvImJ	ENSMUSG00200045495	lncRNA gene	Chr18:34147736-34159544 (-)
A/J	ENSMUSG00195037673	lncRNA gene	Chr18:34300727-34312523 (-)
A/J	ENSMUSG00195034339	protein coding gene	Chr18:34303463-34314467 (-)
AKR/J	ENSMUSG00220016075	protein coding gene	Chr18:34293619-34304656 (-)
AKR/J	ENSMUSG00220017223	lncRNA gene	Chr18:34290880-34302683 (-)
BALB/cJ	ENSMUSG00180017314	protein coding gene	Chr18:34753113-34764117 (-)
BALB/cJ	ENSMUSG00180022359	lncRNA gene	Chr18:34750377-34762173 (-)
C3H/HeJ	ENSMUSG00175040887	lncRNA gene	Chr18:34272378-34284174 (-)
C3H/HeJ	ENSMUSG00175034210	protein coding gene	Chr18:34275114-34286118 (-)
C57BL/6NJ	ENSMUSG00215029500	lncRNA gene	Chr18:34011401-34023212 (-)
C57BL/6NJ	ENSMUSG00215018473	protein coding gene	Chr18:34014140-34025185 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003061	antisense lncRNA gene	Chr18:34273123-34284923 (-)
CAST/EiJ	ENSTCUG00005025665	lncRNA gene	Chr18:33908867-33920654 (-)
CBA/J	ENSMUSG00210021485	lncRNA gene	Chr18:34292386-34304182 (-)
CBA/J	ENSMUSG00210020692	protein coding gene	Chr18:34295122-34306126 (-)
DBA/2J	ENSMUSG00185020459	lncRNA gene	Chr18:34227003-34238799 (-)
DBA/2J	ENSMUSG00185020227	protein coding gene	Chr18:34229739-34240743 (-)
FVB/NJ	ENSMUSG00205036057	lncRNA gene	Chr18:33952677-33964484 (-)
FVB/NJ	ENSMUSG00205023106	protein coding gene	Chr18:33955416-33966457 (-)
JF1/MsJ	ENSUMUG00000046570	lncRNA gene	Chr18:34373996-34385862 (-)
LP/J	ENSMUSG00230048352	protein coding gene	Chr18:36347163-36358204 (-)
LP/J	ENSMUSG00230048683	lncRNA gene	Chr18:36344424-36356231 (-)
NOD/ShiLtJ	ENSMUSG00190017082	protein coding gene	Chr18:34023436-34034440 (-)
NOD/ShiLtJ	ENSMUSG00190024083	lncRNA gene	Chr18:34020700-34032496 (-)
NZO/HlLtJ	ENSMUSG00225047406	lncRNA gene	Chr18:36242502-36254301 (-)
NZO/HlLtJ	ENSMUSG00225045455	protein coding gene	Chr18:36245241-36256245 (-)
PWK/PhJ	ENSLUMG00010013806	lncRNA gene	Chr18:34536587-34548447 (-)
SPRET/EiJ	ENSMSPG00010024334	lncRNA gene	Chr18:34585946-34598064 (-)
WSB/EiJ	ENSIUOG00005008519	lncRNA gene	Chr18:34006173-34017967 (-)

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Gene Tree

Gm10545

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

2
Endonuclease-mediated

1
Targeted

1
Genomic Mutations

2 involving Gm10545
Incidental Mutations

APF
Find Mice (IMSR)

2 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

5

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

36
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000073594 (Evidence)
NCBI Gene

100049566

			Length	Strain/Species	Flank
genomic	ENSMUSG00000073594	Ensembl Gene Model \| MGI Sequence Detail	11812	C57BL/6J	± kb
transcript	ENSMUST00000097612	Ensembl \| MGI Sequence Detail	4969	Not Applicable
polypeptide	Q3UTM7	UniProt \| EBI \| MGI Sequence Detail	137	Not Applicable

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UniProt

1 Sequence

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All nucleic 5

cDNA 5

Microarray probesets 1

Summaries

All 11

Phenotypes 2
Earliest

J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
Latest

J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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