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Kpna2rt Pseudogene Detail
Summary
  • Symbol
    Kpna2rt
  • Name
    karyopherin subunit alpha 2, retrotransposed
  • Synonyms
    Gm10184
Location &
Maps
more
  • Sequence Map
    Chr17:90215903-90217875 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 59.73 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704480
 pseudogene Chr17:90215890-90217877 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028044
 protein coding gene Chr4:7485429-7487143 (+)
A/J MGP_AJ_G0036003
 protein coding gene ChrX:106628438-106630251 (+)
AKR/J MGP_AKRJ_G0035922
 protein coding gene ChrX:109936823-109938636 (+)
BALB/cJ MGP_BALBcJ_G0035994
 protein coding gene ChrX:105298992-105300805 (+)
C3H/HeJ MGP_C3HHeJ_G0035700
 protein coding gene ChrX:107195803-107197616 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016668
 protein coding gene Chr1:92730997-92732016 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033102
 protein coding gene ChrX:54087681-54089855 (-)
CAST/EiJ MGP_CASTEiJ_G0015624
 protein coding gene Chr1:88080796-88081954 (+)
CBA/J MGP_CBAJ_G0035676
 protein coding gene ChrX:113283620-113285433 (+)
DBA/2J MGP_DBA2J_G0027859
 protein coding gene Chr4:7253813-7255533 (+)
FVB/NJ MGP_FVBNJ_G0035770
 protein coding gene ChrX:105155372-105157597 (+)
LP/J MGP_LPJ_G0035922
 protein coding gene ChrX:107696338-107702206 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035801
 protein coding gene ChrX:118360542-118362355 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016710
 protein coding gene Chr1:88720616-88721578 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0015191
 protein coding gene Chr1:87614301-87615287 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    KPNA2, karyopherin subunit alpha 2
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KPNA2, karyopherin subunit alpha 2
  • Synonyms
    IPOA1, PTAC58, QIP2, RCH1, SRP1alpha, SRP1-alpha
  • Links
    NCBI Gene ID: 3838
    neXtProt AC: NX_P52292
    UniProt: P52292

  • Chr Location
    17q24.2; chr17:68035636-68047364 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    21
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100043906 NCBI Gene Model | MGI Sequence Detail 1973 C57BL/6J ±  kb
For the selected sequence
References
more
  • Summaries
    All 5
    Gene Ontology 1
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:164563 The Gene Ontology Consortium, Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs. 2010 Oct;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/23/2024
MGI 6.23 		The Jackson Laboratory